Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00118 ATGGAATCTGGACGCCTTTTCTTTGACGCCTCTGCTTCTCGCGCCAACAACATGCTCTTCCTCGGCACCACTGAACTCGCTTTTCGAGGGagatcgatgatgagcatggaggaagcctctaagaggcgacctttcttcacctcgccggatgaactgtatgatgaggagtattatgaaaagcagtccccggagaagaagcACCGCCTCAGTTCCGATCAGGTCCATCTGTTGGAGAAGAGCTTTGGGGAGGAGAACAAACTGGAGCCTGAGAGGAAGACCCAATTGGCTAAGAAGCTGGGGTTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGAGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTATGATATTCTCAAGTCTTCCTATGATTCCCTACTTTCATCTTATGATTTAATTGCGAAGGAGAATGAGAAACTCAAATCTGAGGTGGAATCCTTAAATGAGAAGCTTCAACTTCAAGCTAAAGAGGTACCTGAGGAACCATTATATGACAAGAAAGTTGATCCACTTCCGGTAGATAATATAGCTCCTATTTTCAGCACAAGGGTGGAGGACCACCTTAGTAGTGGGAGTGTTGGAAGTGCAGTGGTGGACGAGGGTAGTCCCCAGCTGGTCGTTGACAGTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGATGTGTGGGCCCAGTTGAAAGGGTTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTTGATGTGTTGGTGGTATCTGAAACTGAGCACCAAAACCATGAAGGAGAACCATTGGGTTGGTGGAGTAATATGTATTATGAAGGCTGA 849 0.4158 MESGRLFFDASASRANNMLFLGTTELAFRGRSMMSMEEASKRRPFFTSPDELYDEEYYEKQSPEKKHRLSSDQVHLLEKSFGEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSSYDSLLSSYDLIAKENEKLKSEVESLNEKLQLQAKEVPEEPLYDKKVDPLPVDNIAPIFSTRVEDHLSSGSVGSAVVDEGSPQLVVDSVDSYFPADNYGGCVGPVERVQSEEEDGSDDGRSYFDVLVVSETEHQNHEGEPLGWWSNMYYEG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00118 282 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Cca09g00118 282 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Cca09g00118 282 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Cca09g00118 282 Coils Coil 140 167 - -
Cca09g00118 282 CDD homeodomain 65 121 IPR001356 GO:0003677
Cca09g00118 282 Gene3D - 58 128 - -
Cca09g00118 282 SUPERFAMILY Homeodomain-like 63 131 IPR009057 -
Cca09g00118 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 256 - -
Cca09g00118 282 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Cca09g00118 282 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Cca09g00118 282 SMART HOX_1 62 124 IPR001356 GO:0003677
Cca09g00118 282 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Cca09g00118 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 256 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00118 Cca-Chr9 2125548 2128617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00118 1 275 Homeobox Transcription Factor Family AT3G01470 56.584 9.55e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca09g00118 Homeodomain 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00118 K09338 - gmx:100813420 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00118 09 2125548 2128617 Cca09g00118 09 2125548 2128617 ECH