Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00103 ATGGCAAGCACTCCAAGCATTCCATCACTCATAAAAGCTTGGGTCTACTATGAATATGGGAACATAGAAAAGATTCTCAAATTTGAATCTAACATACCTATACCACACATCAACGAGGATCAGGTGCTCATCAAGGTTGTGGCTGCAGGCCTTAATCCTATAGATTATAAGAGGGCTCTTGGCATTTTCAAGGACACTGACTCTCCCTTTCCTACTGCTCCAGGGTTTGATGTTGCTGGTGTGGTGGTAAGAGTGGGAAGTGAAGTGAGAAAATTCAAGGTGGGGGATGAAGTTTATGGTGATATCCATGAGTATGCTGTGCGTCCAAAATCCATTGGGACTTTGGCAGAGTATACTGTTGCTGAAGAGAAACTATTGGCTCATAAACCTTCCAATTTGACCTTTATTGATGCTGCTGCTATTCCTGCAGCCATCATCACCGCTTATCAAGCACTTGAAAAACTGGAATTCTCTGCTGGCAAATCTATTCTTGTTCTTGGAGGTGCTGGTGGAATTGGAACCCTTGTTATTCAGCTCGCCAAGCACGTTTTTGGCGCATCTAAGGTTGCAGCCACTGCTAGTACTTTGAAACTGGATTTGTTAAGGAACTTAGGAGCAGACTTGCCAATTGATTATACAAAAGAGAATTTTGAAGAACTGGAAGAGAAGTTTGATGTAGTGTTCGATACAGTAGGAGAGAGTGGCAAGGCATTGAAGGCTATAAAAGAAGGGGGCAAAGCTTTGTCAATAGTACTACCTGTGTCTCCACCGGTTATCCCTTTCTTTGTCATTTCAAATGGTGCTGTGTTGGAGAAATTGCAACCTTACTTAGAAAGTGGGAAGGTGAAGGCAGTTTTGGATCCTAAGAGTCCCTTTCCATTTTCTCAGATTGTGGAAGCATTTGCATACTTGAAGACAAATAGAGCCATTGGGAAATTAGTCATAGATCAAATTCCATAA 960 0.4208 MASTPSIPSLIKAWVYYEYGNIEKILKFESNIPIPHINEDQVLIKVVAAGLNPIDYKRALGIFKDTDSPFPTAPGFDVAGVVVRVGSEVRKFKVGDEVYGDIHEYAVRPKSIGTLAEYTVAEEKLLAHKPSNLTFIDAAAIPAAIITAYQALEKLEFSAGKSILVLGGAGGIGTLVIQLAKHVFGASKVAATASTLKLDLLRNLGADLPIDYTKENFEELEEKFDVVFDTVGESGKALKAIKEGGKALSIVLPVSPPVIPFFVISNGAVLEKLQPYLESGKVKAVLDPKSPFPFSQIVEAFAYLKTNRAIGKLVIDQIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00103 319 Pfam Zinc-binding dehydrogenase 204 315 - -
Cca09g00103 319 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 319 - -
Cca09g00103 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Cca09g00103 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 319 IPR044626 GO:0016628
Cca09g00103 319 SMART PKS_ER_names_mod 20 315 IPR020843 GO:0016491
Cca09g00103 319 CDD MDR_like_2 12 315 - -
Cca09g00103 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 259 IPR036291 -
Cca09g00103 319 SUPERFAMILY GroES-like 8 165 IPR011032 -
Cca09g00103 319 Gene3D - 152 266 - -
Cca09g00103 319 Pfam Alcohol dehydrogenase GroES-like domain 40 101 IPR013154 -
Cca09g00103 319 Gene3D - 18 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00103 Cca-Chr9 1745637 1747749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00103 40 231 Monolignol Biosynthesis Gene Families AT3G19450 25.000 5.78e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00103 K18980 - gmx:100791274 484.182