Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00101 ATGGCAGCTGATGCTTCAAGTGATCCAACTTTTCCAACCCACACAAAAGCTTGGTACTACTCTGAACATGGTGCACCAAATGTTCTCAAATTTGATCCCAATTGGCCCTTACCCCAACTCAAAGAAGACCAAGTGCTCATCAAGGTCATTGCTGCATCCCTTAATCCCATTGATTACAAGAGGATGAACGGGTTGTACAAGATTTATGACCCTCATTTACCTACTGTTCCAGGGTTTGATGTTGCTGGTGTGGTGGTAAGAGTGGGAAGTGAAGTGAGGAAATTCAAGGTGGGGGATGAAGTATATGGTGATATCAACGAGGAAGGAGTAACAAACCTAAAGGCCCTTGGCACTTTGTCTGAGTATACTATCGCAGAAGAGAGGCTATTAGCACACAAGCCACCAAATCTAAGCTTTGTTGAAGCTGCTGCCATTCCTGCAGCACTTGAAACTGCTCATGAAGGCCTTCAAAGAGCTGAGTTTTCTGCTGGAAAATCTATCCTTGTTGTGGGAGGAGCTGGTGGAGTTGGTCACTTTGTTATTCAGCTTGCAAAGCATGTTTATGGCGCATCAAAGATAGCAGCTACTTCTAGCACTGGAAAACTTGAACTTCTAAGGAAGTTGGGAGCTGACTGGGCTATTGATTATACAAAGGAGAACATTGAAGACTTAACAGAAAAGTTTGATGTAGTCTACGACACCATAGGAGAACCTGATAGAGCATTGAAGGCCGTTAAGGAAGGTGGAAAAGTTGTGACAATAATACCTCCAGGACTTCCACCAGCTATATTTTTCGTGCTAACTTCTAAAGGGTCAATCTTAGATGAGTTAAGACCTTACTTGGAGAGTGGTCAAGTGAAGCCATTACTCGATCCAAAGACCCCTGTGCCATTTTCTCAGCTTATTGAAGCCTATTCCTACTTGGAAACCTCAAGAGCCATAGGAAAAGTGGTCGTTTATCCCATACCTAACTAG 975 0.4349 MAADASSDPTFPTHTKAWYYSEHGAPNVLKFDPNWPLPQLKEDQVLIKVIAASLNPIDYKRMNGLYKIYDPHLPTVPGFDVAGVVVRVGSEVRKFKVGDEVYGDINEEGVTNLKALGTLSEYTIAEERLLAHKPPNLSFVEAAAIPAALETAHEGLQRAEFSAGKSILVVGGAGGVGHFVIQLAKHVYGASKIAATSSTGKLELLRKLGADWAIDYTKENIEDLTEKFDVVYDTIGEPDRALKAVKEGGKVVTIIPPGLPPAIFFVLTSKGSILDELRPYLESGQVKPLLDPKTPVPFSQLIEAYSYLETSRAIGKVVVYPIPN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00101 324 Gene3D - 22 319 - -
Cca09g00101 324 Pfam Alcohol dehydrogenase GroES-like domain 43 104 IPR013154 -
Cca09g00101 324 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 6 323 - -
Cca09g00101 324 CDD MDR_like_2 16 319 - -
Cca09g00101 324 Pfam Zinc-binding dehydrogenase 208 319 - -
Cca09g00101 324 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 164 185 IPR002364 GO:0008270|GO:0016491
Cca09g00101 324 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 6 323 IPR044626 GO:0016628
Cca09g00101 324 SUPERFAMILY GroES-like 15 173 IPR011032 -
Cca09g00101 324 SMART PKS_ER_names_mod 24 319 IPR020843 GO:0016491
Cca09g00101 324 Gene3D - 156 270 - -
Cca09g00101 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 137 289 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00101 Cca-Chr9 1716452 1719460 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00101 70 234 Monolignol Biosynthesis Gene Families AT1G72680 27.083 1.55e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00101 K18980 - gmx:100788619 478.018