Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00087 ATGGCAGAAATATTGGTAGGCAGTGCTTTTCTTTCTGCTTTTCTTGAGGTTGTATTTAACAGGCTGGCTTCTCGTCAAGTTTTAGACTTCTTTCATGGAAGGAAACTTGATGAGAAGCTTCTGAACAAGTTGAAGGTGAAGTTGCGATCCATCAATGCTGTGGTTGATGATGCAGAACTTAAGCAGATTGAAAATCAACTTGTCAGAGACTGGCTTTTTGATGTCAAAGATGCTGTGCATGATGCAGAGGATCTCTTGGACGAAATAGACTATGAACTCTCCAAATACCAAGTGGAAGATGAATCTGAATCTCAAACCTTTACTCACAAGGTATCAAATTTATTCAATGTTACTTTCAGTTCACTTAACAGAAAAATTGACTCAGGGATGAAACAAGTCCTTGAGAAACTAGAAGATCTTGTGAACCAAAAGGATGATCTTGGTTTGAAAGAGGTTACATATTCTGGTGTTGGATCAGGTAATAAAGTTCCACTGAAATTGGAGTCAACATCTTTGGTTGTTGAAAGTTTTTTTTATGGTAGAGATGACGAGAAAGAAATGATCTTTGATTGGCTGACATCTGAAATTGACAGTCATAACCAGCTATCAATATTTTCTATTGTGGGCATGGGTGGAGTGGGTAAGACCACGCTGGCACAACATGTATACAATGACCCACGGATGGAAGAGACTAAATTTGATATCAAAGCTTGGGTCTGTGTTTCAGATGATTTTGATGTTTTGACAGTGACAAGAACAATTCTTGAAGCATTCACTGGATTaaaatatgacaatggaaaactagaaatggttcatagaagattgaaaatagaaCTGACAGGGAAGAAATTTCTTCTCGTTTTGGATGATGTATGGAACGAGAGACGAGAGAATTGGGAAGTTTTACAAACTCCTCTTAATTTTGGGGCTCCAGGGAGTAGAATTCTTGTTACAACACGCAGTGAGAAAGTTGCTTCTGCCATGCGGTCTCATAAAGTTTATCACCTAAAGCAATTACAAGAAGAACATAGCTGGCAAGTTTTTGCCAAACATGCATTCCTAGATGGTTATCCTCAGTTGAATGATGAGATGAAGGAGATTGGTGCACTAATAGTTAAAAAGTGCAAAGGATTGCCACTGGCCTTGAAATCAATTGGAAGTCTTTTACATAAGAAATCTATTTCAGAATGGGAAAGTGTATCACTAAGCAAGATATGGGACTTACGGAAAGAAGATAGTGAAATTATCCCTGCCCTATTTTTGAGCTATCACCACCTTCCGTCTCATCTCAAAAGGTGCTTTGCTTATTGTGCATTATTTCCCAAAGATTACAAATTTGACAAGGAGGGTTTAATTCAATTGTGGATGGCTGAAAATTTTCTACAATGTCTTCAAGAGAGCAAGAGTCCAGAAGAAGTCGGTGAACAATACTTTGATGATCTATTATCAAGATCTTTCTTTCAACGGTCAAGCAAATCAGAAATTTTTGTCATGCATGACCTTCTAAATGATTTGGCAAAATATGCATGTGGGGACATCTGTTTTAGGTTGGGAATTGATAAAGCAGAAAGTATACCAAAAACAACCCGTCATTTTTCATTTGGATTCAATGACCTTCGATCTTTCGATTGGTTTGAAAGTTCATATTATGCTGCTAAAAGGTTGCATACATTTATTCTAATGCAGGAGGTAGGGTTTTTTTTCTTTGATTGGGGGTGCATGATTTCAATACATGACTTGTTCTCCAGGTTTAAATCTTTACGCATCTTATCTTTGTCCCACTGTTTTAACCTTAGAGATGTTCCGGACTCTCTAGGCAAACTTAAACATCTTCGTTCATTAGACCTTTCAAGTACTGACATAAAAAAACTACCCAATTCAACTTGTTTGCTCTATAACTTGCAAATTTTGAAGTTGAACAATTGTCTCAGTTTGGAGGAGCTTCCCACAAAGTTGCATAACCTTACTAATTTGCGTCGCCTTGAATTTGCAAATACACAAGTGCAGAAGACGCCGAAGCATTTGGGAAGACTGAAGAATCTTCAAGTATTGAGTTCGTTTTGTGTTGGCAAAAGTAGTGACCTCAGTATTAAGCAGTTAGGAGGACTCAATCTTCATGGAGGTCTGTCAATTGAGGAGTTGCAAAATATTGTGGATCCCTCGGATGCATTAGCAGTGAATTTTAAAAATAAAACTCACCTTGTGGAGCTAAAGTTAGAATGGAATTCAAACCGGATCCCTGATGATCCAAAGAAAGAAAAGGAAATAGTTCAGAATCTACAACCTTCGAAACACTTGAAGGATTTGTCGATCTATAGCTATGGTGGTACACAATTTCCAAGTTGGTTATCAAATGTGAATGTAGTGTCCTTACGGTTGGTGCATTGTAAATATTGCCTAGTGTTGCCTCCCTTTGGTGTTTTGCCATTTCTCAACAAGTTGACGATTATAGGGCTTGATGGGATAGTAAGTATTGGTGCTGAATTTTATGGGAGTAGCTCTTCTTCATTTCCATCCTTAGAAACATTGCAGTTCTTGGATATGAAGGAATGGGAAGAATGGGAATGTCAAGCTGCTGCTTTTCCACGTCTTCAATTTCTTGTTGTAGTGGATTGTCCCAAGCTGAAAGGTCTTCCAGTTCAACTTCTTCACGTAAAAAATGTAGAAATTCGTGAATGTGGAAGGCTCAAAATTACTTCCCACTCTCTAACGACCTTTCCACTAGAAGTGTTTCCAAAACTCCATTCACTTGAACTTTGGCACTGTTGTAATTTTCAAATAATTTCACAGGAACACACTTGTAATAATCTCAAGAATCTGAAAATTAATGACTGCCCCAAATTTGAATCATTTCCTA 2857 0.3721 MAEILVGSAFLSAFLEVVFNRLASRQVLDFFHGRKLDEKLLNKLKVKLRSINAVVDDAELKQIENQLVRDWLFDVKDAVHDAEDLLDEIDYELSKYQVEDESESQTFTHKVSNLFNVTFSSLNRKIDSGMKQVLEKLEDLVNQKDDLGLKEVTYSGVGSGNKVPLKLESTSLVVESFFYGRDDEKEMIFDWLTSEIDSHNQLSIFSIVGMGGVGKTTLAQHVYNDPRMEETKFDIKAWVCVSDDFDVLTVTRTILEAFTGLKYDNGKLEMVHRRLKIELTGKKFLLVLDDVWNERRENWEVLQTPLNFGAPGSRILVTTRSEKVASAMRSHKVYHLKQLQEEHSWQVFAKHAFLDGYPQLNDEMKEIGALIVKKCKGLPLALKSIGSLLHKKSISEWESVSLSKIWDLRKEDSEIIPALFLSYHHLPSHLKRCFAYCALFPKDYKFDKEGLIQLWMAENFLQCLQESKSPEEVGEQYFDDLLSRSFFQRSSKSEIFVMHDLLNDLAKYACGDICFRLGIDKAESIPKTTRHFSFGFNDLRSFDWFESSYYAAKRLHTFILMQEVGFFFFDWGCMISIHDLFSRFKSLRILSLSHCFNLRDVPDSLGKLKHLRSLDLSSTDIKKLPNSTCLLYNLQILKLNNCLSLEELPTKLHNLTNLRRLEFANTQVQKTPKHLGRLKNLQVLSSFCVGKSSDLSIKQLGGLNLHGGLSIEELQNIVDPSDALAVNFKNKTHLVELKLEWNSNRIPDDPKKEKEIVQNLQPSKHLKDLSIYSYGGTQFPSWLSNVNVVSLRLVHCKYCLVLPPFGVLPFLNKLTIIGLDGIVSIGAEFYGSSSSSFPSLETLQFLDMKEWEEWECQAAAFPRLQFLVVVDCPKLKGLPVQLLHVKNVEIRECGRLKITSHSLTTFPLEVFPKLHSLELWHCCNFQIISQEHTCNNLKNLKINDCPKFESFP 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00087 952 Pfam NB-ARC domain 182 402 IPR002182 GO:0043531
Cca09g00087 952 Coils Coil 41 61 - -
Cca09g00087 952 Gene3D - 162 334 IPR027417 -
Cca09g00087 952 PRINTS Disease resistance protein signature 278 292 - -
Cca09g00087 952 PRINTS Disease resistance protein signature 582 598 - -
Cca09g00087 952 PRINTS Disease resistance protein signature 375 389 - -
Cca09g00087 952 PRINTS Disease resistance protein signature 204 219 - -
Cca09g00087 952 Gene3D Ribonuclease Inhibitor 561 950 IPR032675 -
Cca09g00087 952 Coils Coil 130 150 - -
Cca09g00087 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 437 IPR027417 -
Cca09g00087 952 Pfam Rx N-terminal domain 10 103 IPR041118 -
Cca09g00087 952 SUPERFAMILY L domain-like 497 951 - -
Cca09g00087 952 Gene3D - 34 126 - -
Cca09g00087 952 Gene3D - 338 421 IPR042197 -
Cca09g00087 952 PANTHER DISEASE RESISTANCE PROTEIN RP 14 950 IPR044974 GO:0006952
Cca09g00087 952 PANTHER OS05G0414200 PROTEIN 14 950 - -
Cca09g00087 952 Gene3D - 422 509 IPR036388 -
Cca09g00087 952 ProSiteProfiles Leucine-rich repeat profile. 610 631 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00087 Cca-Chr9 1507900 1510906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00087 206 440 WRKY Transcription Factor Family AT5G45050 28.745 2.87e-10 62.8