Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00083 ATGGAGCATGTTTTGGAAAAAAGATTTCCTCTTAGTGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCCGTATACAGGGCTCTTTGCATTCCCCTCAATGAGATAGTTGCCATCAAGGTTCTTGATCTAGAGAAGTGCAATAATGATCTGGATGGCATTCGAAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATGTTTTACGGGCACATTGTTCTTTTACTGCTGGACACAATCTATGGGTTGTAATGCCATACATGGCAGGGGGGTCTTGCCTTCATATAATGAAATCTTCCTTTCCTGAGGGTTTTGATGAGCCTGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGTCACATACACAGAGATGTTAAGGCTGGGAATATTTTGCTTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGACACTGGAGATAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCCGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACGGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAAGAGTTAGTTGCGACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAAAATGCACGTGGCACCAAATATTTAGCTCGAACCATTCTAGATGGTCTTGCTCCTTTGGGAGATCGTTTTAGATTGCTGAAGGCTAAAGAGGCGGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGACAAGGAGCAATTATCACAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTAAAAAATCAAGCTTCTCTTATTCAAGATGATGACATAACTAGTGCAGAAGAGCCACATAGGGATAAGAAGCAAAAAGACAGATTGGATGACTTCAGGGTTCCTGCAGAGGGGCTATCAGCTGTAGTGTCTAATCATTCAGATGATGCATCCATGCAGGACAAGGAGGGTGGATTCAACAATCTTCGGGATTTGGAGGGTTCACTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGACGACGTTAATAATAGCAGTCCAAGAGATTTGGATCATGATTATGGACGGATTAACAATGAAAACTCTGGGCCAAGTACTTCATTACAACAAAATGCTATTGCTCAGCAAAAAAAGTTTTTGAGTGGTTCTTTGCTACCTGACAATTTTCTTTTTCCCAAAAAGGTTGTTACTGATGGGGACAGGGATTATCTACAAACAAAATATTCTTCGGAGAGGAATCACAGTGGTCCATTGCAATATCGGCAGAAGAGAGATACCAACAACCTCCCAATGGTTGATGACACATCAGACGGAGCATTTGTCCAGCGTAGGGGGCGGTTTAAGGTTACTTCAGCAGATCTCAGTCCAATGGGTCCTTCAAACAGCACTTCTGGCCCAATTGTTAGTCCTACCAGTCCACCAAATCAAAATTTTTTGGCTGCTGCTATTCTTCCATCACTGCAGTGCATCCTGCAACAGAACGGTTTACAGAGGGAAGAGATTATTAAATTAATAAAGTATGCAGAGCAATCTTCTGGCAAGAATACAGAATCAGTGGAAGCAGGGATAGTTGATATTTCGCAGGTACCACCAGCAACAACCAGGGAGCGAGAGCTCCATTTTCAGGTGATTCAACTCCAACAGAGCATTGGGAGCCTTGTCGAGGAATTGCAAAGACAAAAGATGAAAAATGTTCAGTTAGAAAAACAGTTGAGCAGTATGGTTAACAAAGTGGAAAAGTGA 2019 0.4116 MEHVLEKRFPLSAEDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLRAHCSFTAGHNLWVVMPYMAGGSCLHIMKSSFPEGFDEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFKNARGTKYLARTILDGLAPLGDRFRLLKAKEADLLVQNKALYEDKEQLSQKEYIRGISAWNFNLEDLKNQASLIQDDDITSAEEPHRDKKQKDRLDDFRVPAEGLSAVVSNHSDDASMQDKEGGFNNLRDLEGSLASFPSKPLQALKGCFDMCEDDVNNSSPRDLDHDYGRINNENSGPSTSLQQNAIAQQKKFLSGSLLPDNFLFPKKVVTDGDRDYLQTKYSSERNHSGPLQYRQKRDTNNLPMVDDTSDGAFVQRRGRFKVTSADLSPMGPSNSTSGPIVSPTSPPNQNFLAAAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNTESVEAGIVDISQVPPATTRERELHFQVIQLQQSIGSLVEELQRQKMKNVQLEKQLSSMVNKVEK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00083 672 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cca09g00083 672 MobiDBLite consensus disorder prediction 541 560 - -
Cca09g00083 672 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cca09g00083 672 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00083 672 MobiDBLite consensus disorder prediction 356 373 - -
Cca09g00083 672 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 669 - -
Cca09g00083 672 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 669 - -
Cca09g00083 672 MobiDBLite consensus disorder prediction 438 463 - -
Cca09g00083 672 SUPERFAMILY Protein kinase-like (PK-like) 14 278 IPR011009 -
Cca09g00083 672 MobiDBLite consensus disorder prediction 354 373 - -
Cca09g00083 672 MobiDBLite consensus disorder prediction 546 560 - -
Cca09g00083 672 MobiDBLite consensus disorder prediction 501 525 - -
Cca09g00083 672 CDD STKc_OSR1_SPAK 14 277 - -
Cca09g00083 672 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00083 672 Gene3D Transferase(Phosphotransferase) domain 1 97 294 - -
Cca09g00083 672 MobiDBLite consensus disorder prediction 498 535 - -
Cca09g00083 672 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00083 672 Coils Coil 642 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00083 Cca-Chr9 1425760 1444068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00083 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 66.667 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Cca09g00083 Pkinase 5.4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00083 K08835 - gmx:100778837 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00083 09 1425760 1444068 Cca09g00083 09 1425760 1444068 ECH