LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00082	ATGACAAGTGAAAAGCTGGCTGGACCAAATCTGAACTCTCTACGTGGATTTGAGCTCATAGACAAGATTAAGTATTTGCTAGAAGAGGAATGTCCCATTACTGTTTCATGTGCTGACATCCTTGCCATGGCTGCACGTGACGCGGTTGAATTGGGGTTCAGAGGTGAACTGCGCCGGGCTTATGACTCATGCGCCTGGCGTAGAGAGTGTAGAAAACTCTCTGGAAGCAAGTGCGCCGGGCTCAAAACAGAATTGCGCCGGGCTCAAAACAGAATTGCGCCGGGCGCAGAGTAG	294	0.5068	MTSEKLAGPNLNSLRGFELIDKIKYLLEEECPITVSCADILAMAARDAVELGFRGELRRAYDSCAWRRECRKLSGSKCAGLKTELRRAQNRIAPGAE	97

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00082	97	SUPERFAMILY	Heme-dependent peroxidases	2	51	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Cca09g00082	97	Gene3D	-	1	92	-	-
	Cca09g00082	97	PANTHER	PEROXIDASE 20	1	51	-	-
	Cca09g00082	97	Pfam	Peroxidase	2	51	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Cca09g00082	97	PANTHER	PEROXIDASE 72-RELATED	1	51	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca09g00082	97	PRINTS	Plant peroxidase signature	15	28	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca09g00082	97	PRINTS	Plant peroxidase signature	34	44	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Cca09g00082	97	ProSiteProfiles	Plant heme peroxidase family profile.	1	97	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00082	Cca-Chr9	1400695	1402097	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00082	1	51	Peroxidase	AT2G35380	78.431	5.86e-22	84.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00082	K00430		-	gmx:100778051	101.293