Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00076 ATGGACAAAAAACCATGCAACTTATCTCAAGATCCCGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCTCTAGCCAAGGCTTCTGGTCTTAAACGTACGGGGAAGAGTTGTCGACTTCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACTCACGAGGAACAACTTTTGATTGTAGAGCTTCATGCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACCGACAATGAGATTAAGAACTTTTGGAGAACTAGGATACAGAAGCACATTAAGCAAGCTGAGAATCTACAACAACAGGTTAATATTTCAGAGATAAATGACCATCATCAAGCAAGCACAAGCACTAGCAAAGTTTCCACCATGGCACATCCCATTGAGACTTACTCTTCATCTTCATACCAACCAGTAACTTTGGAGCCATATTTTCCAACTCAGTTTCCTATAATCACTGATCAGTCAAGTTGCTGTACCAATGATGACAACAACAATAACTATTGGAGCATGGAGGATATCTGGTCTATGCAATTACTCAATGGGGATTAA 627 0.4083 MDKKPCNLSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITHEEQLLIVELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENLQQQVNISEINDHHQASTSTSKVSTMAHPIETYSSSSYQPVTLEPYFPTQFPIITDQSSCCTNDDNNNNYWSMEDIWSMQLLNGD 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00076 208 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Cca09g00076 208 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Cca09g00076 208 Gene3D - 71 146 - -
Cca09g00076 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Cca09g00076 208 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 205 - -
Cca09g00076 208 CDD SANT 73 112 IPR001005 -
Cca09g00076 208 SMART sant 15 65 IPR001005 -
Cca09g00076 208 SMART sant 68 116 IPR001005 -
Cca09g00076 208 Coils Coil 107 134 - -
Cca09g00076 208 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Cca09g00076 208 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Cca09g00076 208 CDD SANT 18 63 IPR001005 -
Cca09g00076 208 Gene3D - 16 68 - -
Cca09g00076 208 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 205 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca09g00076 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Cca09g00076 208 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00076 Cca-Chr9 1256906 1261458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00076 10 208 MYB Transcription Factor Family AT3G01530 59.406 4.73e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00076 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00076 K09422 - gmx:100305972 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00076 09 1256906 1261458 Cca09g00076 09 1256906 1261458 ECH