Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00072 ATGTATCACCTGATTCCTATAAATAAACCCTTACATTCATTTCACTTCTTCTTCCTCCTCCTTTCGTTCCTCCTTCTCACTTTCGTCCCATTTTCGAAGCGCGCCGTAAGGTTCTGCGACTCCAAAACCGAACCTGAATTTGGTTTCAATCTCAGAGAGAGAAATACCGTTCTACTGCACAGAATCTACGGCCTCTTCGTAAATCGAATTGTATTATCTTGCTATGGCTGGCACAGCAACTGCCTCTTCAATGGGTCCGCGTATGAGAGACCCTCGAGTACAGCTGCCCAGCCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACAGTCGTCGCAAGGGTTGCAGCGTGGTCGCAGTCCTGATTTCAGTGATAGGTACGATAGAAGTAGCGGTGGTGGGTTGAATGAAGCTGGATCACGGAACCATCAGGGTTCCAAAGGTGGAGGTTATAGTTCTCATAATGTTCCAAATGGAACAAATGTTGCCGGCAATGTTAATGCTTCTGTCAAAGGTCATGTGGCTTCTGATGCTGGAGCTGGACTATCTCCTGATTCTTATCGGCAAAGACATGAAATAACTGTGACTGGAGACAATGTACCTCCTCCCCTTACATCATTTGGGTCTTCTGGTCTTCCATCTGAGATTCTGAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTACAAAGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGGTATTTAATGCCAGCATTTGTTCATCTGAAGCGCTGTGGTAATAACTCCAAAATGGGTCCTACTGCATTGGTACTTTCCCCAACGAGGGAGTTGGCAACTCAGATCCAAGATGAAGCTGTGAAGTTTGGGAAATCATCAAGAATTTCTTGTGTATGTTTGTATGGAGGAGCACCTAAGGGTCCTCAACTAAGAGACATTGATCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGATTCGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTAATCGCCGGCAAACTCTCATGTTTACTGCAACATGGCCAAAGGAGGTTAGAAAAATTGCAGCTGACCTGCTAGTGAAGCCTGTCCAGGTGAACATCGGCAATGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTATTGCCACCAATGGAGAAACAGAGACGGCTGGAGCATATCTTGCGGTCACAGGATCAAGGATCAAAGATAATTATATTTTGCTCTACGAAGAAAATGTGTGATCAACTTGCTCGTAACCTGACACGACAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCAGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGTCTCCTGTGCTAGTAGCCACAGATGTTGCTGCCCGGGGACTGGATATCAAAGACATTAGGTTGGTGGTTGTCAACTATGACTTCCCTACAGGTGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAACCAGAAGGTACCTGTGGAACTTCGTGATATGTCATCTCGAGGTGGTGGGGGGATGGGCAGATCCAGACGATGGGGTTCTTCTGGTGGACGAGGTGGACGTGGTGATTCTGGATATGGTGGAAGGAGTAATGACTCTGGATATGGTGGAAGGAATAATGACTCTGGATATGGTGGAAGGAGTAGCGATGCAGGATTTGGTGGAAGAGGAAGCGATTCAAGTTATGGCGGGAGGGGGACTGCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAACCACACAGGTTGGTTTTGGGTCGGAGCCCAGACAAGGGATCTAGTTGGAGTGATCGCTTCAAAAGTGTGAGCCGTGACCGTAGCCGCAGTCGTAGTCCTGACAGGGCTCCAGTACCTCAACATTCCCAAAGCAGCAGCTTTCACAAGGCAATGATGGAACACAGTGGTGGATGGGATAGTGATATCAATAAGAGCTTTAATCGGGATCGAAGCCGCAGTCGCAGCCCTCACAGACCGGCACCAGCACCAGCAGGTCGCGAACGTTCCCCAGTTTACAGTTTTCATCGTTCAATGATGGGGCAGCGAGCACCTGAAAAAAATTGTAGGTCTAATAGTCCTCCGAAAGAGTGGGGCAGTGGAAGACATTTCAATGGAGAAGAGGAGGAAGGGATGATTCCCGAAGAAGATACCATATATCAAAGTGTTAATTAG 2436 0.4741 MYHLIPINKPLHSFHFFFLLLSFLLLTFVPFSKRAVRFCDSKTEPEFGFNLRERNTVLLHRIYGLFVNRIVLSCYGWHSNCLFNGSAYERPSSTAAQPKSSSVPSSSVQVQQSSQGLQRGRSPDFSDRYDRSSGGGLNEAGSRNHQGSKGGGYSSHNVPNGTNVAGNVNASVKGHVASDAGAGLSPDSYRQRHEITVTGDNVPPPLTSFGSSGLPSEILREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLMPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPPMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRLVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPVELRDMSSRGGGGMGRSRRWGSSGGRGGRGDSGYGGRSNDSGYGGRNNDSGYGGRSSDAGFGGRGSDSSYGGRGTAASGRGGGRGFDYEPHRLVLGRSPDKGSSWSDRFKSVSRDRSRSRSPDRAPVPQHSQSSSFHKAMMEHSGGWDSDINKSFNRDRSRSRSPHRPAPAPAGRERSPVYSFHRSMMGQRAPEKNCRSNSPPKEWGSGRHFNGEEEEGMIPEEDTIYQSVN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00072 811 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 358 366 IPR000629 -
Cca09g00072 811 Gene3D - 417 588 IPR027417 -
Cca09g00072 811 MobiDBLite consensus disorder prediction 682 702 - -
Cca09g00072 811 Gene3D - 185 416 IPR027417 -
Cca09g00072 811 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 207 235 IPR014014 GO:0003724
Cca09g00072 811 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 145 681 - -
Cca09g00072 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 564 IPR027417 -
Cca09g00072 811 Pfam Helicase conserved C-terminal domain 438 547 IPR001650 -
Cca09g00072 811 SMART ultradead3 226 429 IPR014001 -
Cca09g00072 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 441 586 IPR001650 -
Cca09g00072 811 CDD SF2_C_DEAD 426 556 - -
Cca09g00072 811 MobiDBLite consensus disorder prediction 581 811 - -
Cca09g00072 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 412 IPR014001 -
Cca09g00072 811 MobiDBLite consensus disorder prediction 703 718 - -
Cca09g00072 811 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 145 681 - -
Cca09g00072 811 SMART helicmild6 466 547 IPR001650 -
Cca09g00072 811 MobiDBLite consensus disorder prediction 93 168 - -
Cca09g00072 811 MobiDBLite consensus disorder prediction 93 121 - -
Cca09g00072 811 Pfam DEAD/DEAH box helicase 231 401 IPR011545 GO:0003676|GO:0005524
Cca09g00072 811 MobiDBLite consensus disorder prediction 137 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00072 Cca-Chr9 1133512 1138902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00072 205 585 Eukaryotic Initiation Factors Gene Family AT3G19760 33.854 9.17e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00072 K12823 - gmx:100786511 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00072 09 1133512 1138902 Cca09g00072 09 1133512 1138902 ECH