Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00070 ATGGATCCAAGCTTTCAAAATCTCCCATACCTTTCAAGCCTTTTCCCCGAAAATCCCTACCTGAAGCCACTACAAAGTTCCATACTCATTCCACCATCACCACAACCCATCATGTTCCATCCAGGCAACAATTCAGAACATTTTCAAAACCAAATAATGAGTGTGGCCACCCAAAACCCTGCCTTTGTGATGGGGGGTCCTTCTTCCACCCCTTTGTATGGGATACCAACCCCATCTTTGGGTGATGGATCTTCTTCAGGAGGAGGTTTTGTTGACGATTACCATCATCATCCTATGATGTTAGAACAAAACAATAACAATAAAATGGATGTTTTGCCTGGACACCACCACAAAGGAAAAGACATAAGTGATTTTTCACAGAAAAGCATGATTCATCCCTTTCAAGCTTCTTCTTCCATGACACCATCACCTCTTTTTCTCTCTAATGAGAATGGGTTGCCAATGAGTGAATATCAATGGGACATTGATCAGAGGATGGACAAATTTCAAAATGATAATGCTAATGATAACATAATTAAAGGGCAGTGGACTGAAGAAGAGGATAGTGCTCTTGTGAAATTGGTTGAAAAGTTTGGACCGAAGAAATGGTCGGAAATTGCGAAGTTACTACAAGGCAGGATTGGAAAGCAGTGTCGAGAAAGATGGTTTAACCATCTCCAACCAAACATTAAGAAGGGTCCATGGACCCTAGAGGAAGACATAATTCTAATTGAAGCTCATCATGAAATTGGAAAGAAATGGTCAGAAATTGCAAAGAGATTGCCTGGAAGGCCTGAGAACTCCATCAAGAACCACTGGAACAGCACCATGCGACGCCAGAATTGCAAGAGGCAAAAGAATAACAATGACTCAAATTATGAAGGATCATTGCTCCATGCCTATGTCAAAAGGGTCACTTCTATTGAACAAGCTACCAAAGTGCTCGAGAACAATAATGAGGAGCATAACAAGTCACATGATGTCTTCAATGGAAGCACCAGCAACTATGTGTCCATGCAAGTCAACAATAATAATAATGTTGATGGTGGAAACATTAACTGTGCGCAATATTGGCACATGCTGCGATGA 1089 0.4114 MDPSFQNLPYLSSLFPENPYLKPLQSSILIPPSPQPIMFHPGNNSEHFQNQIMSVATQNPAFVMGGPSSTPLYGIPTPSLGDGSSSGGGFVDDYHHHPMMLEQNNNNKMDVLPGHHHKGKDISDFSQKSMIHPFQASSSMTPSPLFLSNENGLPMSEYQWDIDQRMDKFQNDNANDNIIKGQWTEEEDSALVKLVEKFGPKKWSEIAKLLQGRIGKQCRERWFNHLQPNIKKGPWTLEEDIILIEAHHEIGKKWSEIAKRLPGRPENSIKNHWNSTMRRQNCKRQKNNNDSNYEGSLLHAYVKRVTSIEQATKVLENNNEEHNKSHDVFNGSTSNYVSMQVNNNNNVDGGNINCAQYWHMLR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00070 362 PANTHER MYB DOMAIN PROTEIN 100-RELATED 141 327 - -
Cca09g00070 362 SMART sant 179 228 IPR001005 -
Cca09g00070 362 SMART sant 231 279 IPR001005 -
Cca09g00070 362 ProSiteProfiles Myb-like domain profile. 227 277 IPR001005 -
Cca09g00070 362 PANTHER MYB PROTEIN-RELATED 141 327 - -
Cca09g00070 362 CDD SANT 234 274 IPR001005 -
Cca09g00070 362 Pfam Myb-like DNA-binding domain 183 241 - -
Cca09g00070 362 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Cca09g00070 362 CDD SANT 183 226 IPR001005 -
Cca09g00070 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 281 IPR017930 -
Cca09g00070 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 230 IPR017930 -
Cca09g00070 362 Gene3D - 179 231 - -
Cca09g00070 362 Gene3D - 234 297 - -
Cca09g00070 362 SUPERFAMILY Homeodomain-like 177 273 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00070 Cca-Chr9 1095923 1098605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00070 93 305 MYB Transcription Factor Family AT4G18770 45.045 5.89e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00070 Myb_DNA-bind_6 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00070 K09422 - ccaj:109801641 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00070 09 1095923 1098605 Cca09g00070 09 1095923 1098605 ECH
Cca07g01016 07 21414301 21417651 Cca09g00070 09 1095923 1098605 ECH