Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00068 ATGTCTCCTTATTCTCTCTCTTTGTTAGCCTCTCATCACAACCCCAAAATGCACACCCTTTCTTTTTTGTCACACTCTCCACATCATGTTCCAAACCACACATCCAAACCCAAGAATTTCCCTTTTCAATTCTCTCCTCATTCCCACACCATCAATGGACCCTCTTCTTCTTTGCTCCTCACTGCCACAAAGTCTTCACCTTTTCTCCTTTCCACCCCAAAATTTGCATCTTTCAGAGTCCTTGCTGCCTCTCTTCCTGAAGCCAGAAGTGATGAACCAACCAAAACTAGTGGTTTGCTCAAGACTCTACAGCTTGGGGCCATGTTTGCAACTTGGTACCTCTTGAATATCTACTTCAACATCTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAGCATTTCAATTTGGGTTTGCAACATTGATGATTAATTTGATTTGGAGCTTGAATCTCCATAGGAGACCAAACATAAGTGGCTCACAGCTTGCAGCAATTCTTCCTCTGGCTGTGGCTCACACAATTGGGAATCTCTTGACCAACATTAGTCTTGGAAAGGTTGCTGTATCTTTCACTCACACAATCAAAGCTATGGAGCCTTTCTTCACTGTTGTTCTTTCCACTCTTTTCCTGGGTCAGAGGCCTACTTTCTGGGTAGTTTCTTCCCTTATACCAATAGTGGGGGGAGTGACACTGGCATCAATGACTGAAGTCTCTTTCAATTGGATTGGATTCACTACTGCTATGGCATCTAACCTTACCAATCAATCACGGAATGTTTTGAGCAAAAAACTGATGACTAATGAAGAGGAAGTTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCCTTTATCTTGTTGGTCCCATGCACTATACTTGTGGAGGGTGTCAAGTTTACTCCTTCTTACCTGCAATCTGCTGCAAGCCAAGGGCTGAATGTTAGAGAGCTGTGTGTCAAATCAGTTTTGGCTGCTTTCTGCTTCCATGCATATCAGCAGGTCTCTTACATGATATTACAAATGGTGTCCCCTGTGTCCCACTCGGTTGGAAACTGTGTGAAGCGTGTGGTTGTCATTGTTTCTTCAGTTATCTTCTTCCAAACTCCTGTCTCACCCATTAACACACTTGGAACTGGTGTTGCACTTGTTGGAGTTTTCTTGTACTCAAGGGCAAATCGGATAAAGCCAGTGCCAAAGACAAATTGA 1227 0.4262 MSPYSLSLLASHHNPKMHTLSFLSHSPHHVPNHTSKPKNFPFQFSPHSHTINGPSSSLLLTATKSSPFLLSTPKFASFRVLAASLPEARSDEPTKTSGLLKTLQLGAMFATWYLLNIYFNIYNKQVLKVYPFPATVTAFQFGFATLMINLIWSLNLHRRPNISGSQLAAILPLAVAHTIGNLLTNISLGKVAVSFTHTIKAMEPFFTVVLSTLFLGQRPTFWVVSSLIPIVGGVTLASMTEVSFNWIGFTTAMASNLTNQSRNVLSKKLMTNEEEVLDNINLYSVITIISFILLVPCTILVEGVKFTPSYLQSAASQGLNVRELCVKSVLAAFCFHAYQQVSYMILQMVSPVSHSVGNCVKRVVVIVSSVIFFQTPVSPINTLGTGVALVGVFLYSRANRIKPVPKTN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00068 408 PANTHER SOLUTE CARRIER FAMILY 35 38 402 - -
Cca09g00068 408 Pfam Triose-phosphate Transporter family 103 396 IPR004853 -
Cca09g00068 408 PANTHER PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 38 402 - -
Cca09g00068 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 150 239 - -
Cca09g00068 408 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 103 405 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cca09g00068 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 322 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00068 Cca-Chr9 1066232 1074097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00068 78 407 Antiporters AT5G33320 65.758 1.30e-152 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00068 K15283 - gmx:100819280 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00068 09 1066232 1074097 Cca09g00068 09 1066232 1074097 ECH