Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00064 ATGGCTTCCAAATATCAAaacaaccactactactacaactacaactacaacAATCCATCATTTGTTGTTGTTTTGTTCTCAGTGGCCACCCTCTTGTGTTTCTCCCACTCAGCACTATCTGATCCAAGAATCTCAGAAGTGGGGCACTACTGTGGCACACACAAGGCACAACCAAGTGACAACTACTTCCACATTTTCATCAATGAAATGGAAAGGCTTCAAGATCTTGTGACAAAACACAAGTGGGGTGTTCACTCTGAGAACATGTCTTCAACCACTCCTATGTATGGTTTGGCACAATGCTTCCAAGACCTTTCCCACACTGATTGCCTTCAGTGCTTTGCTGAAAGCCGCACCAAGCTTCCTCGCTGCCTCCCTTCAGTTTCTGCTCGCATTTACCTTGATGGTTGCTTCCTTCGCTATGATAACTACAGTTTCTACACTGAGGACACTGACCCTTTGAGGGACACAGTGAACTGCACCTCTCAGAATGGTGCTGTGGTTGGTGATGCTGAAAAGTTGGTGTTTAATGAGAGTGTTGGTGAAGTGGTTGAGAGTGTGGTGAGGGAGGCAGTGAATGAGGGAGGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAAGTGTTGAGGGGAAAGGGTGTGATCATTGCTTGAGGAAAGCTGGAAATGAGGTTAGAGGGTGCTTGCCTAGGAGGGAAGGGAGGGCCTTGAATTCAGGGTGTTATTTGAGATATTCAACTGTTAAGTTCTACAATCAAGGAGGTCATGATGGTGAAGGGGATGATTCTTCTAGAAAACGAACCATCATAGCAGCAGTGTTAGTTTTGGCTGCAGCAATTGTAGTGCTCTCTCTCGCGGCCTTCACCAAATTATCAAAGAGAAAAAAAAACAATTCCATTGAGATTCCCTCTTCCTTAAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTCAGCTCTTTAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTATTCAAAGGAACTCTACCAAATGGGAAAGATGTTGCTGTTAAGAGATTAGTCTTCAATAATAGGCAATGGGTGGATGAATTCTTCAAtgaagtgaatttaattagtggaatgcaacacaaaaaccttgtcaaactattggggtgtagcattgaaggccctgagagcctcattatgtatgagtacctacctaacAAGAGCTTAGATCAATTCATTTTTGAAAAGGACAAAACAAGGATTCTAAAAtggaagcagcggtttgatataattcttggaactgcagaagggcttgcatatcttcatggaggctctgaaacaagaatcatccatagagacatcaaaagtagcaatgttcttcttgatgagaatctcaatcccaagattgcagattttggtcttgccaggtgctttggtactgataaaactcatctaagcactgGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTCATTCAAGGACAACTTACAGATAAAGCTGATGTCTATAGTTTTGGAGTACTTGTTCTAGAAATTGTATGTGGCTGGAAGAATAATGTCTTCCGTGAGGATTCTGGTTCCCTTTTGCAAACAGTTTGGAAACTATACCAATCAAAAAGATTGGCTGAAGCTGTTGATCCTTGCTTGGAAGATGATTTTCCAGCAGCAGAAGCATCAAGGGTTTTTCAAATTGGATTACTATGCACACAAGCTTCTCCTTCCCTGAGGCCATCCATGACTCAAGTTGTTTGCATGTTAAGTAATTCAAATTTAGACGTCCCTATACCAAAACAACCCCCATTTTTGAACTCTAAATTGCTAGATCAAACACCTCCATTAGGATTTAGCACAGACATCTCCTCATCAAATGCATTTAAGGTTGGTGTGTCCAACAGCTCCTTTGAGTCCTCTAGTACACGCAGCTTAATTAGGCCATCAAGAAGTGAAGAAAAAATTATGGAAGCTTGA 2010 0.3532 MASKYQNNHYYYNYNYNNPSFVVVLFSVATLLCFSHSALSDPRISEVGHYCGTHKAQPSDNYFHIFINEMERLQDLVTKHKWGVHSENMSSTTPMYGLAQCFQDLSHTDCLQCFAESRTKLPRCLPSVSARIYLDGCFLRYDNYSFYTEDTDPLRDTVNCTSQNGAVVGDAEKLVFNESVGEVVESVVREAVNEGGGFAVGEGEGVYALAQCWKSVEGKGCDHCLRKAGNEVRGCLPRREGRALNSGCYLRYSTVKFYNQGGHDGEGDDSSRKRTIIAAVLVLAAAIVVLSLAAFTKLSKRKKNNSIEIPSSLKNSSLNYKYETLEKATDYFSSLRKIGQGGAGSVFKGTLPNGKDVAVKRLVFNNRQWVDEFFNEVNLISGMQHKNLVKLLGCSIEGPESLIMYEYLPNKSLDQFIFEKDKTRILKWKQRFDIILGTAEGLAYLHGGSETRIIHRDIKSSNVLLDENLNPKIADFGLARCFGTDKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLEIVCGWKNNVFREDSGSLLQTVWKLYQSKRLAEAVDPCLEDDFPAAEASRVFQIGLLCTQASPSLRPSMTQVVCMLSNSNLDVPIPKQPPFLNSKLLDQTPPLGFSTDISSSNAFKVGVSNSSFESSSTRSLIRPSRSEEKIMEA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00064 669 Pfam Protein kinase domain 333 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00064 669 Gene3D Transferase(Phosphotransferase) domain 1 408 607 - -
Cca09g00064 669 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Cca09g00064 669 CDD STKc_IRAK 338 600 - -
Cca09g00064 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Cca09g00064 669 SMART serkin_6 332 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00064 669 ProSiteProfiles Gnk2-homologous domain profile. 44 146 IPR002902 -
Cca09g00064 669 Gene3D - 158 257 IPR038408 -
Cca09g00064 669 Gene3D - 44 146 IPR038408 -
Cca09g00064 669 Pfam Salt stress response/antifungal 172 254 IPR002902 -
Cca09g00064 669 Pfam Salt stress response/antifungal 84 144 IPR002902 -
Cca09g00064 669 SUPERFAMILY Protein kinase-like (PK-like) 316 619 IPR011009 -
Cca09g00064 669 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 34 656 - -
Cca09g00064 669 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 34 656 - -
Cca09g00064 669 ProSiteProfiles Protein kinase domain profile. 332 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00064 669 ProSiteProfiles Gnk2-homologous domain profile. 156 257 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00064 Cca-Chr9 1012560 1017430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00064 23 497 Receptor kinase-like Gene Family AT5G40380 54.979 1.60e-177 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca09g00064 Pkinase 9.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00064 - - gmx:100819689 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00064 09 1012560 1017430 Cca09g00064 09 1012560 1017430 ECH
Cca11g00698 11 11852905 11857796 Cca09g00064 09 1012560 1017430 ECH