Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00057 ATGGCCTCTTCTAGCTACTCCAATTCTCCATGTGCTGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATTTTTGCCCCATATTTCCCCCCAGAAGAGCCTCAAAAGTTCGCCAATGTACACAAGATCTTTGGTGCAAGCAATGTGAGCAAACTCCTCAATGAGGTGCAACCCTATCAGAGAGAGGATGCTGTGAACTCTCTTGCCTATGAAGCTGAAGCAAGGATCAAAGATCCAGTCTATGGCTGTGTTGGTGCCATTTCAGTGCTCCAAAGGCAAGTCCTAAGGCTACAGAAGGAACTTGATGCCACAAATGCTGATTTGATCCGCTATAGTTGCACTGAAATGCCAAGTACTCATCATGGAATGAGAAGGGTGAGTGATGATGGAGGTGGTGGTTCCTCACTTGGTCACTCTCATGGTTTCTCTAGACCTTCTACTACTAGTTGGAACAATGATCCTTATGGAAATAATGGCTACCCCAGAGGTGATATATAA 504 0.4544 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRYSCTEMPSTHHGMRRVSDDGGGGSSLGHSHGFSRPSTTSWNNDPYGNNGYPRGDI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00057 167 Coils Coil 89 109 - -
Cca09g00057 167 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cca09g00057 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Cca09g00057 167 MobiDBLite consensus disorder prediction 120 167 - -
Cca09g00057 167 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cca09g00057 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 156 - -
Cca09g00057 167 MobiDBLite consensus disorder prediction 141 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00057 Cca-Chr9 889919 891805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00057 4 114 AS2 family AT3G27650 84.685 2.10e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca09g00057 LOB 2.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00057 - - gmx:100788656 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00057 09 889919 891805 Cca09g00057 09 889919 891805 ECH
Cca07g01001 07 20906321 20908650 Cca09g00057 09 889919 891805 ECH