Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00044 ATGGAATCTCCCGGTAACGAGCATGTGGTAGGCGGCGCCGAACCCAACGACGTCGTCACAACATTTTCTCACAGAGAAGAACCCCACAATTCTCAACCCCTCACCGGCGATGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATGGATCAATTTATCAAGCACTTTGGTAAATATGGTGAGATAACGGATTCAGTTATCATGAAGGACAGGAAAACTGGGCAACCTCGAGGATTTGGGTTTATAACTTACGCGGATCCCTCGGTGGTCGATAAAGTCATTGAGGATCCTCATATCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACTCGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACATTTGACACTGAAGAAGCTGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCAGCACCTCCACCATCCAAGCGCTATAATGACTCGAGGTCTTCATACGGTGGTGGTGGATATGGAGATGCTTATGATGGATTTAGTGGAAGCTTTGGAGTTGGGGGTGGCTATAGGTCAGGCGGTGCTTATGGTGGTGGTAGGGGCAGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGATATGGAGGATATGCTGGTGCGATGGCGCCGTATCGAGGAGATCCATCCCTTGGCTATACTGGTCGTTATGGTGGAAGCTTTAGCCGAGGGTATGATCTTGGTGGGTATGGTGGACCGAGTGAGAATTATGGCGCATATGGTGCAGGTGGTGGTTCTTCTGGCGGTGCTGGTGCCTATCAAAGTGGCTATGATGGCAACATAGGGGGTGGATATGGAGGGGCTAGTGGAGGCCCCTTCTATGGAAGCAGTAGAGGAGGATACAATGCTGGTGGTAGATACCATCCTTATGGAAGATAA 1116 0.474 MESPGNEHVVGGAEPNDVVTTFSHREEPHNSQPLTGDGASPGKIFIGGLARETTMDQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDTEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPPSKRYNDSRSSYGGGGYGDAYDGFSGSFGVGGGYRSGGAYGGGRGSAYGAYGSEFGGYGGYAGAMAPYRGDPSLGYTGRYGGSFSRGYDLGGYGGPSENYGAYGAGGGSSGGAGAYQSGYDGNIGGGYGGASGGPFYGSSRGGYNAGGRYHPYGR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00044 371 SUPERFAMILY RNA-binding domain, RBD 127 234 IPR035979 GO:0003676
Cca09g00044 371 MobiDBLite consensus disorder prediction 204 227 - -
Cca09g00044 371 SUPERFAMILY RNA-binding domain, RBD 31 120 IPR035979 GO:0003676
Cca09g00044 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Cca09g00044 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Cca09g00044 371 SMART rrm1_1 131 204 IPR000504 GO:0003723
Cca09g00044 371 SMART rrm1_1 43 114 IPR000504 GO:0003723
Cca09g00044 371 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 371 - -
Cca09g00044 371 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 371 - -
Cca09g00044 371 Gene3D - 124 238 IPR012677 -
Cca09g00044 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Cca09g00044 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Cca09g00044 371 Gene3D - 42 121 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00044 Cca-Chr9 681825 685632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00044 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 1.03e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00044 K12741 K14314 gmx:100793209 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00044 09 681825 685632 Cca09g00044 09 681825 685632 ECH