Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00040 ATGGAAAAAGAGATTGTAGAAAACCTTTGGAACGGTGACACAGAATCTCAGATTCAAGCAGCAATGAATCTTGGTAGATTAAGCCGTAAGCAGAGGCACATGTTGGAAGCAAGTGTTGTTATGGTTCCTCTGGTTTCCATGCTTCATTCTGAAAACTATGAAGCCATAGAAGCTGCTCTGTGTGCTTTGCTCAGCCTTTCCTTTGGCAGTGATAGAAACAAGATTCGGATCATCAGAACTGGAGCTTTGCCGGTTCTGCTGAGTCTCCTCCATTGTGATAAGCAGACAGTGATACAATTGACCTTAGTAGCCATGCTAACCCTATCTTCTTGCAAGGAAAATAAAGTAGCAATTGCTTCATCTGGTGCTGTTCGAGTCTTGGCTGAATTTGTCAACAGCAATGATAGCACTAGCACTCAGTCTCAGCTTGATGCTATAGCTACTCTACACAACCTCACCACCTGCCAAGAGATTATTCCACATATTGTCTCTTCCGGTGTTATGCTCTCCTTGCTTGAACTGATCCACAGCTCAGTGAAATCATCTCCATTGGCTGAGAAAGCAATTGGGTTGCTAGAAAACATTGTGTCTTCTTCAGAGAGCGCACTTTGTGAGGCTGCTGGTACTGGGGGAGCAATCAGGATACTGGTTGAGACTATTGAAGATGGGTCTCTACTAAGTAAAGAGCATGCAGTGTGTATACTTCTGCTTATATGCCAGAGCTGCAGAGAGAAATATAGAGGATTGATTTTGACAGAGGGGGTGATGCCAGGATTGCTTCAGTTAAGCGTGGATGGAACATGGAGAGCCAAATCCATGGCCCAAAAATTGTTGTTGCTTCTGAGGGACTGCTCCAATTATGGCTCAGGATGTAAACAAATTAATCACGAGCTTATAGAACGGATAATGgaagaaattgaagaagaagaaggagagaaATTGGCGGATACTACTTTAAAGTTGGTGGTGGAGATGATTGCAAAGCTCCATGCATAA 996 0.4237 MEKEIVENLWNGDTESQIQAAMNLGRLSRKQRHMLEASVVMVPLVSMLHSENYEAIEAALCALLSLSFGSDRNKIRIIRTGALPVLLSLLHCDKQTVIQLTLVAMLTLSSCKENKVAIASSGAVRVLAEFVNSNDSTSTQSQLDAIATLHNLTTCQEIIPHIVSSGVMLSLLELIHSSVKSSPLAEKAIGLLENIVSSSESALCEAAGTGGAIRILVETIEDGSLLSKEHAVCILLLICQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMAQKLLLLLRDCSNYGSGCKQINHELIERIMEEIEEEEGEKLADTTLKLVVEMIAKLHA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00040 331 Gene3D - 205 312 IPR011989 -
Cca09g00040 331 SMART arm_5 28 68 IPR000225 GO:0005515
Cca09g00040 331 SMART arm_5 111 154 IPR000225 GO:0005515
Cca09g00040 331 SMART arm_5 70 110 IPR000225 GO:0005515
Cca09g00040 331 SMART arm_5 155 197 IPR000225 GO:0005515
Cca09g00040 331 Gene3D - 3 204 IPR011989 -
Cca09g00040 331 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 201 IPR000225 GO:0005515
Cca09g00040 331 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 310 - -
Cca09g00040 331 SUPERFAMILY ARM repeat 4 312 IPR016024 -
Cca09g00040 331 PANTHER U BOX DOMAIN-CONTAINING 1 310 - -
Cca09g00040 331 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00040 Cca-Chr9 586038 587474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00040 3 290 U-box Gene Family AT2G23140 31.741 5.32e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00040 - - gmx:100778534 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00040 09 586038 587474 Cca09g00040 09 586038 587474 ECH