Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00029 ATGCTGGGTCCCACGCCCAAGTTATATCTATCATCCCACACCTTAAATACTCACCACACTAACACTAAAACGCGTTTCTCTCTTGTTTCTCCTTCTTTCGCACTTATGGCTAGAAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAACACTACTGTGTCAACAACTGATCAAATCAAGGATTTTGGAACATATCGTAAATGCCCCAAATGTCATTACCATAATGATAACAATGATGTTTCTCATGTGTGGCCTGGCTTTCCTGTTGGCGTAAAGTTTGTTCCTTCTGATGTTCAGCTTTTAGAGCATTTAGCAGCAAAGTGTTGTATCGGAAACAGAAAGCCGCACATCTTTATTCATGATTTCATCCCTACTCTAGAAGGAGATCAAGGAATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAATAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGACAAAGAAAGCGTCGAAAGATTCATGATGAACGTGGTTTGAATGAGGAGAATGTACGCTGGCACAAGACTGGTAGGACCAAAGCTGTGATAGAAGATGGAGTGCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTAAGATCCAAGAAAGGGTCCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTAGGGAGTGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAGTTTTTTATCAACAGCACAAGAAGAATGAGGAGAATCCAGTGGTTGAAGATTCTAAGATAGCAGCACAAACAGGTCCAAGAACTCCAATTCCAAATCCCCCTACTCGACCTTGTACAGGCAAATCTGATGACAATTTTGATGAAAATGAACTTCTGCCATTCATCCAGGATGCCAAGCCTATACCTGGAGGATCACATACACCACCATCTGATGTTCAGGATGAGGACAATAAGCAAGACCCTGCATGCTTGGCTGGTGAACCACAGGCTGACTCTGACTTTGATGGCTTGGATGACATATTGTTATGCAAGGAGATGTTAGGTTCATCTGCTCTCTTTACTGATTCTGAATTGACCTCCACTATTAAAGGAGATTCAATCAAGTTTGTTGCACCTGGAAACAATAATGATCATGCATCTTATGGAATTTCTATCTTGGACACACTGGAATTGGATTCTCCTCCAGATTTTGATCTTTCTAATTTGCAATTTGGTTCCCAAGACAGCACCCTTCAGTGGATTGACAAGCTATAA 1275 0.4086 MLGPTPKLYLSSHTLNTHHTNTKTRFSLVSPSFALMARSWLIDIGGFAKKVKNTTVSTTDQIKDFGTYRKCPKCHYHNDNNDVSHVWPGFPVGVKFVPSDVQLLEHLAAKCCIGNRKPHIFIHDFIPTLEGDQGICYTHPENLPGAKKDGNSVHFFHKTVNAYATGQRKRRKIHDERGLNEENVRWHKTGRTKAVIEDGVHKGFKKIMVLYVRSKKGSKPYKTNWVMHQYHLGSEEDEKDGEYVVSKVFYQQHKKNEENPVVEDSKIAAQTGPRTPIPNPPTRPCTGKSDDNFDENELLPFIQDAKPIPGGSHTPPSDVQDEDNKQDPACLAGEPQADSDFDGLDDILLCKEMLGSSALFTDSELTSTIKGDSIKFVAPGNNNDHASYGISILDTLELDSPPDFDLSNLQFGSQDSTLQWIDKL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00029 424 MobiDBLite consensus disorder prediction 256 338 - -
Cca09g00029 424 ProSiteProfiles NAC domain profile. 90 251 IPR003441 GO:0003677|GO:0006355
Cca09g00029 424 Pfam No apical meristem (NAM) protein 91 232 IPR003441 GO:0003677|GO:0006355
Cca09g00029 424 Gene3D NAC domain 99 256 IPR036093 GO:0003677|GO:0006355
Cca09g00029 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 36 422 IPR044799 GO:0003700
Cca09g00029 424 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 36 422 - -
Cca09g00029 424 SUPERFAMILY NAC domain 75 251 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00029 Cca-Chr9 345326 351181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00029 71 251 NAC Transcription Factor Family AT1G28470 57.219 5.98e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g00029 NAM 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00029 - - gmx:100780662 652.899