Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00028 atgggatcttgcaatgaggttcactcagttggggagttcaatttagattccaagtggcttgtggatcccaaacagctatttgttggtccaaaaattggggagggtgctcatgccaaagtgtatgaaggaaaatataaaaatcaaaatgttgctgttaagattatcaacaagggagaaactccggaagagatttcaaggagagagggtcggtttctcagagaggttgatatgttgtcgagagttcaacacaagaatcttgttaagTTTATTGGGGCTTGCAAAGAACCTGTAATGGTTATAGTAACTGAGCTTCTATTAGGTGGAACATTGCGCAAATATCTCTTGAATATGCGGCCAAAGTGCTTGGATATGCCTGTGGCTGTTGGATTTGCTCTTGATATTGCCAGAGCAATGGAATGTTTACACTCCCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGCTGATCACAAGACAGTTAAACTTGCTGATTTTGGTCTGGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAAACTGGAACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAATCACAAGGTGGATGCCTACAGCTTTGCAATTGTGCTGTGGGAACTCATTCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTGCAGGCTGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTGGCTATGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCAACTATTTCACCACTCGAGCCAGTTGTTCCTCTGCGGATGAATTCATCTGAGAATGCTGTGTTGCCACCGGAGTCTCCTGGCACAAGTGCATTGATGCTTGGAAGAGATGATTCTGGAGAAACCCCAACAGCCATAGGGGAAGACAGGTCCAAAGGGTTCTTCTCCTGCTTTAACCAGTGTTACTGA 1059 0.3296 MGSCNEVHSVGEFNLDSKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREGRFLREVDMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLAMIVTSCWKEDPNDRPNFSQIIQMLLRYLSTISPLEPVVPLRMNSSENAVLPPESPGTSALMLGRDDSGETPTAIGEDRSKGFFSCFNQCY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00028 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Cca09g00028 352 Gene3D Transferase(Phosphotransferase) domain 1 107 301 - -
Cca09g00028 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00028 352 PANTHER PROTEIN KINASE ATN1 1 329 - -
Cca09g00028 352 CDD STKc_MAP3K-like 32 286 - -
Cca09g00028 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Cca09g00028 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Cca09g00028 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Cca09g00028 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Cca09g00028 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cca09g00028 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 329 - -
Cca09g00028 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Cca09g00028 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00028 352 SUPERFAMILY Protein kinase-like (PK-like) 17 311 IPR011009 -
Cca09g00028 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00028 Cca-Chr9 335931 339868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00028 9 352 MAP Kinase Kinase Kinase AT5G50180 78.198 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca09g00028 PK_Tyr_Ser-Thr 1.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00028 - - gmx:100792887 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02531 07 54287483 54290196 Cca09g00028 09 335931 339868 PCT