Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00025 ATGGTGAAGGCATCATCTCAAACTCTAACCCACGTATCTTCCCTTCTCTTATCCATGTCCTCCGCAAGGTTCGGATTCTTCTGCCACTTCCCAACACTCCCTCCTTCTTCCTTCCCCTTCCCCACTCCAAGACTCTTCTCCACCAACCCCTCTCCATACCCTCTCCAATACGAACTCATCATCAACCGTCCATCCTACCCCGAAACCCCCCGCCCACCACCTGTTCGACCCAATGACTCTCCCGAACACGACCCGCCCCAACTCGACAAGGCCCAGAGGAAGTACTACAACAAACGCCGCAAGAGGATGTACGGCTCCGACTCCGATCAAGACACCAACGCGCCGCATGACCAAGATTTCGTCGAGTTGAAGCCCGAGGTGGTCGACTTTCCCACGCTGCATAAGAGAGAAGAAGAGTTGTACTTCTACGACGCGTTTGCCTATCCCTGGGAGAAGGAGAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGACCAATGCCTTGATAAGGCCTTCCTCCAACCTGGACAGTCAGATGCAAATGGAAAGGGAAAGGGTAGGAAGAAAGTTGGTGGTGGTGATGAAAAGCTGGTGTTTTTTGAGGGGAAAGTGGAGGAGGAAGACAAGGGTGGGAGTGGGAGTGGGAGTGGAACTAGAGAACTTAAGGAGAAGAAGGTTGAGGAGTTTTTTAAGGGTTTGAAGAAGGTTCCTGATAACAAGGATGTTCAGGTTGGAGGAGACCCTTTTCTTTCGTCAAGGAGGACTGCTCTCCCTCCCGTGTGGGATAGTCCACATGGCACTGTGGTTTTGATCAACAAACCCAAAGGTTGGACTTCATTCACTGTTTGTGGAAAGCTGCGGCGCCTTGTCAAAGTGAAAAAGGTAGGGCATGCTGGGACTCTTGACCCAATGGCTACTGGTTTACTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGAGAGGCTACTTCAACATGGGACGCTGATTCACCGGTCATTCAACGTGAGTCATGGGAGCACATCAAAGATGAGGATATAAAGAAAAGTGCTTTGTCCTTTCGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTTCAGTTTGACATAGAGCGTAGCTTGGACGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCACTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCGGCAGATGATGCATGGGATTTTCAAGAGCTGGAAGAAGCTATTACCAAAAATTATCTCTGA 1470 0.4769 MVKASSQTLTHVSSLLLSMSSARFGFFCHFPTLPPSSFPFPTPRLFSTNPSPYPLQYELIINRPSYPETPRPPPVRPNDSPEHDPPQLDKAQRKYYNKRRKRMYGSDSDQDTNAPHDQDFVELKPEVVDFPTLHKREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQSDANGKGKGRKKVGGGDEKLVFFEGKVEEEDKGGSGSGSGTRELKEKKVEEFFKGLKKVPDNKDVQVGGDPFLSSRRTALPPVWDSPHGTVVLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRESWEHIKDEDIKKSALSFRGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKNYL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00025 489 Gene3D Pseudouridine synthase 266 488 - -
Cca09g00025 489 MobiDBLite consensus disorder prediction 66 81 - -
Cca09g00025 489 MobiDBLite consensus disorder prediction 64 90 - -
Cca09g00025 489 TIGRFAM TruB: tRNA pseudouridine(55) synthase 271 480 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca09g00025 489 MobiDBLite consensus disorder prediction 101 119 - -
Cca09g00025 489 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 250 487 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca09g00025 489 MobiDBLite consensus disorder prediction 100 119 - -
Cca09g00025 489 SUPERFAMILY Pseudouridine synthase 271 484 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca09g00025 489 Hamap tRNA pseudouridine synthase B [truB]. 269 489 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca09g00025 489 Pfam TruB family pseudouridylate synthase (N terminal domain) 291 441 IPR002501 GO:0006396
Cca09g00025 489 CDD PseudoU_synth_EcTruB 272 483 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cca09g00025 489 Pfam tRNA pseudouridylate synthase B C-terminal domain 442 485 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00025 Cca-Chr9 315591 321829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00025 272 463 NAC Transcription Factor Family AT3G57150 33.333 2.97e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00025 K03177 - gmx:100793939 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00025 09 315591 321829 Cca09g00025 09 315591 321829 ECH