Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00018 ATGGAGTTTGAGAATTGGAGTATAGAGGTGCCAGTAGATAATTGTGAAAGCATAAGTGAAGGAGTAGAAAACATTGAAGGCATAAATGAAGGAGTATTTAATTTTCAAGGAATAAATGAAGGAGAAGATAATATAAatgaggatgaggttgaggatgaggatgaggatgaggaAGATGAGAATTTGGTTATTGATTTACAGGAGAATTGTGAAGAAGAAGTGGAAAATGTTGTTAATGAAGGAAGATCTGAGGTTTTTGACAGTGAAAACGGGGTGATAGTTTCTACTTTGGATGATATTTTTAATTTAGATTTGCATTTAAGTCCCTATGAACTCAGGAATGTTCAATTTGTAAGTGTTGAGATGGCTTACTTATTTTATTACTGGTTTGCAAGAGTTAATGGATTTGCTGCAAGAAAGAGCAAGATTTTGAGAAATATTAAGGGGGAAAAATTACAACAAACATTTGTTTGTTTCAAGGAAGGATTTAGAGATAAGCGGCGTATGAACATACAGAATCGAAAGCGAAAGGAAACACCGGTGACAAGGTGCGGATGTGAAGCAAAACTAAGAGTGCATATTGATAGCACATGTGGACTATGGTACATTACATATTTTGTGGATGATCACAACCATAGTTTTTTGGAAGATAAGTATTGTAGAATGTTAGCTTCTCATAGAGATATGAGTGAGTTAGATATTATGCAGTTGAATAAAATGAGAAAAGTTGGCATAAGTAGTCCTCATATTTATGGGTCACTTGCAGATCAGCCTGGAGGTTATGAGAGACTTTCTTTTTGTAAAAAGGACATATACAATCAAATTGGAAGGCAAAGAAGGTTGCAAGGTTTGGATTCAAAATGTGCGTTGGAATTTTTGAATGGTTTAAAACGCAATGATCCTGTAATGTATGTTGGTCACACTGTTGATGAGAAAATGATTAAAAATAAGGTGGGCCTGGAGGTGGAGGATTGGGCCACCCAGGAGGCCCAGGAGGATGGTGATGCACAATTGGTGGTGGCGGGGGATGAAAGGGGTCAGGCGGTGGCCCAGGCGGAGCGTGGTGATGCGGCGGTGGTGGTGGTGGATGAAAGGGAGCTGGCGGAGCATAGTGATGGGGCGGCGGCGGAGGTGGAGCAAAAGGGTCTGGTGGTGGTGGTGGAGGGAAGAAGACATGGGGTGGTGGTGGCGAAGGAGGTGGACCTGGAGGCGGAGGTCCGGGCGGCGGAGGATGGCGGTGGTAACTCATGGTTTGCAATAGAAAGTGATGGTTATCTTGGATAG 1284 0.4058 MEFENWSIEVPVDNCESISEGVENIEGINEGVFNFQGINEGEDNINEDEVEDEDEDEEDENLVIDLQENCEEEVENVVNEGRSEVFDSENGVIVSTLDDIFNLDLHLSPYELRNVQFVSVEMAYLFYYWFARVNGFAARKSKILRNIKGEKLQQTFVCFKEGFRDKRRMNIQNRKRKETPVTRCGCEAKLRVHIDSTCGLWYITYFVDDHNHSFLEDKYCRMLASHRDMSELDIMQLNKMRKVGISSPHIYGSLADQPGGYERLSFCKKDIYNQIGRQRRLQGLDSKCALEFLNGLKRNDPVMYVGHTVDEKMIKNKVGLEVEDWATQEAQEDGDAQLVVAGDERGQAVAQAERGDAAVVVVDERELAEHSDGAAAEVEQKGLVVVVEGRRHGVVVAKEVDLEAEVRAAEDGGGNSWFAIESDGYLG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00018 427 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 62 241 - -
Cca09g00018 427 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 62 241 - -
Cca09g00018 427 Pfam FAR1 DNA-binding domain 126 215 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00018 Cca-Chr9 243303 248345 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca09g00018 FAR1 2.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00018 - - ccaj:109791042 508.834