Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00012 ATGGCCTTACAGAACATTGGTGCTGCAAATAGTGATGATGCCTTCTATAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGTAGAGGGAATGGCATCAAAACAAATGTTGTCAACATGGTTGACATTGCCAAGGCATTGGCAAGGCCACCCTCTTACACTACCAAGTACTTTGGGTGTGAACTTGGAGCCCAATCGAAATTCGATGAGAAAGCTGGGACTTCTCATGTTAATGGGGCACATGACACTGCAAAACTTGCTGGTCTTCTTGAGATCTTCATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAACCCGGAAACTGAGATATTAATTACTAAGAACCAAATGGTCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCAGATGTGGATATGAGAGATAAGCTTACTTCATTTATTATAAAAAACCCTCCTGAAACAAAGAAAGGATCCAAAGACAAGAAGGCAATGAGGAGAGCTGAGAAGGAAAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAAATGAAGAAAATAAAGAAAGAATCTAAGAAAAAGGGCTCGTCTACTACAAAGGATGAGACCACAAAATTGAACTCTACAAAGAAGAAAGCCAGTGGCTCTGATGAAGATCGTCAATCTCCAGCCCACATTCaagttgatgagaaagaagaggctccggatgaagatgatgatgaagTACAATGGCAAACAGACACGTCATTAGAGGCTGCTCGGCAACGTATCCAAGAACAGCTAAGTGCTGTAACAGCTGATATGGTAATGCTCTCCACAGATGAGCCAGAGAAGAAGGAAAAGGGAGCAAGTAAGAAAAGTGATGGTTCTGAAAATGGTAATTCAATGCACTACAGTAAACTGGTTGGAGAAGTGAAGGCAATCTTGAACAAAGGTATCGCGGCAAATGAATTGCAGTCCCATATGGCAGCTCTTCCTGCACCAGCACAAGAAAAGATCAGTGCTCTGTTTGAGGTCTTATTTGAGGGTACTGAGAAAGGGTTTGCCAAAGAAGTCGCCAAGAAGAAGCGCTACCTTGCTGCTGCAGTTTCTGTGGGGGAGGGATCACAGCTACAATTGCTTCGTGCAATTGAGGCTTTCTGCTTAAAGTCCACTTCCAATGCTTTGAAGGAAATTGCCATTGTTTTGAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAGTACATAGTGCAGTGGTTTCAAGAAGGGCTGAAGGGTGATAATAAGGACTCCCAGATATGGAAGAATGCCAAACCTTTGATTGACTGGCTTCAAAGTGCGGAATCAGAATCAGAGGAAGAATAA 1326 0.414 MALQNIGAANSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGCELGAQSKFDEKAGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMVQLKCAACGFVSDVDMRDKLTSFIIKNPPETKKGSKDKKAMRRAEKERLKEGEAADEEMKKIKKESKKKGSSTTKDETTKLNSTKKKASGSDEDRQSPAHIQVDEKEEAPDEDDDEVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKKEKGASKKSDGSENGNSMHYSKLVGEVKAILNKGIAANELQSHMAALPAPAQEKISALFEVLFEGTEKGFAKEVAKKKRYLAAAVSVGEGSQLQLLRAIEAFCLKSTSNALKEIAIVLKALYDADVLEEEYIVQWFQEGLKGDNKDSQIWKNAKPLIDWLQSAESESEEE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00012 441 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Cca09g00012 441 Gene3D - 2 104 - -
Cca09g00012 441 SMART 542_3 349 437 IPR003307 GO:0005515
Cca09g00012 441 SUPERFAMILY ARM repeat 294 435 IPR016024 -
Cca09g00012 441 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Cca09g00012 441 Gene3D - 105 145 - -
Cca09g00012 441 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Cca09g00012 441 ProSiteProfiles W2 domain profile. 284 441 IPR003307 GO:0005515
Cca09g00012 441 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 441 IPR045196 GO:0003743|GO:0006413
Cca09g00012 441 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 441 - -
Cca09g00012 441 MobiDBLite consensus disorder prediction 148 224 - -
Cca09g00012 441 CDD W2_eIF5 324 434 - -
Cca09g00012 441 MobiDBLite consensus disorder prediction 265 280 - -
Cca09g00012 441 MobiDBLite consensus disorder prediction 143 236 - -
Cca09g00012 441 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Cca09g00012 441 Gene3D - 288 441 - -
Cca09g00012 441 MobiDBLite consensus disorder prediction 265 289 - -
Cca09g00012 441 Pfam eIF4-gamma/eIF5/eIF2-epsilon 363 441 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00012 Cca-Chr9 157559 160045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00012 1 434 Eukaryotic Initiation Factors Gene Family AT1G36730 62.921 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00012 K03262 - gmx:100796565 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00012 09 157559 160045 Cca09g00012 09 157559 160045 ECH