LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00005	ATGGCAGACGCTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTCAAGGCAGGATTCGCTGGAGATGATGCCCCACGCGCTGTGTTTCCTAGCATTGTTGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAGAAAGATGCGTATGTTGGTGATGAGGCACAGTCTAAACGTGGTATTCTGACTCTCAAGTACCCCATTGAGCATGGTATTGTTAGCAATTGGGATGATATGGAGAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTGGCTCCAGAAGAGCACCCGGTTCTGTTGACAGAGGCTCCTCTTAACCCTAAGGCTAATCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGCTCCTGCCATGTATGTAGCCATTCAGGCTGTTCTTTCATTGTATGCCAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCAATCTATGAGGGTTATGCCCTCCCACACGCCATCCTTCGGCTTGATTTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAAATTCTGACTGAACGTGGATATTCTTTCACCACGTCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAGAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACATCCAAGACTAGCTCTGCAGTGGAGAAAAGCTATGAATTGCCTGATGGGCAGGTTATCACCATTGGTGCTGAGCGTTTCAGGTGTCCTGAGGTCTTGTACCAACCATCCATGATAGGGATGGAAGCAGCAGGCATTCATGAAACCACATACAACTCCATAATGAAATGTGATGTAGACATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCAGGAGGTACCACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATTTCTGCTTTGGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCACCTCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGATGAGTCTGGACCATCAATTGTGCATAGAAAGCGAGGAGTTTATTTTGTTAAAATGCTGTTTTGCAAGGCAATTGAGATATGGGGTTATAAACTAGATTCGTGGACAATGTGA	1206	0.4693	MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKRGVYFVKMLFCKAIEIWGYKLDSWTM	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00005	401	ProSitePatterns	Actins signature 2.	358	366	IPR004001	-
	Cca09g00005	401	PANTHER	-	1	375	-	-
	Cca09g00005	401	PANTHER	ACTIN	1	375	IPR004000	-
	Cca09g00005	401	ProSitePatterns	Actins and actin-related proteins signature.	106	118	IPR020902	-
	Cca09g00005	401	Gene3D	-	10	371	-	-
	Cca09g00005	401	SUPERFAMILY	Actin-like ATPase domain	6	155	IPR043129	-
	Cca09g00005	401	Gene3D	-	140	340	-	-
	Cca09g00005	401	SMART	actin_3	7	377	IPR004000	-
	Cca09g00005	401	Gene3D	Actin; Chain A, domain 4	182	273	-	-
	Cca09g00005	401	PRINTS	Actin signature	63	85	IPR004000	-
	Cca09g00005	401	PRINTS	Actin signature	117	130	IPR004000	-
	Cca09g00005	401	PRINTS	Actin signature	28	37	IPR004000	-
	Cca09g00005	401	PRINTS	Actin signature	142	161	IPR004000	-
	Cca09g00005	401	PRINTS	Actin signature	51	62	IPR004000	-
	Cca09g00005	401	PRINTS	Actin signature	238	254	IPR004000	-
	Cca09g00005	401	Pfam	Actin	5	375	IPR004000	-
	Cca09g00005	401	SUPERFAMILY	Actin-like ATPase domain	149	375	IPR043129	-
	Cca09g00005	401	CDD	NBD_sugar-kinase_HSP70_actin	10	183	-	-
	Cca09g00005	401	ProSitePatterns	Actins signature 1.	55	65	IPR004001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00005	Cca-Chr9	101253	103551	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00005	1	375	Cytoskeleton Gene Families	AT3G12110	96.533	0.0	758

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00005	K10355		-	gmx:100798523	749.199