Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02834 ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCACTGTACAAGGAATTGTGGCATGCCTGTGCTGGTCCTCTTGTCACTCTTCCGTGTGAAGGGGAGAGAGTTTATTACTTCCCGCAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTCGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCTCAAATAACTTTGCTTCCTGAAGCAGATCAAAATGAGGTGATGAGTCCTGACGATCCTCTGCCCGAACCTGCAAGATGTACAGTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCCGTTCTTCGGAGACATGCAGATGATTGTCTGCCACCACTGGATATGACTCAGCAGCCACCCTGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGGCATATCTTTCGAGGGCAACCCAGACGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGAGGTGAAAATGGAGAATTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAACAACATGCCATCTTCTGTTATATCCAGCCACAGTATGCATCTGGGTGTTCTGGCCACTGCTTCTCATGCCATTGCCACTGGAACATTGTTTTCTGTATTTTATAAGCCCAGAACAAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTCGAGGGCGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCTATTTTGCGTCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGGTCACGACCTCCCATTCTATCTTCAACAATGCCTGATTCTTCTCTGCAAGGCGTATGGAAATCACCAGTTGAATCTGCACCTTTCTCTTATCGTGACCATCAACATGGCCGAGATGTCTATTCATCACCCAAATTCAATTCGACTGCAACTGGATTTCTTGGTTTTGGTGGGAATTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGGATGGAAAATTCTACAGAATCTTTTTCACCTGTAGCACTTCAAGAATCTGGAGAGAAGAGACAAGGAACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTCGAGAATTCTAATGAAGAAAGTCTACCAATGGTTACCTTATCAGGAAGGGTGGGTGATGATGGCCCCCTCCCATCTTTGGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCAGTAAGCTGTGATGCTGAAAAGTCATGCCTGCGGTCTCCTCAGGAGTCACAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCATATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTGAGAAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTATGTGGATCCACAAAAAAATGGCAGGTCGTGTACACtgataatgaagatgatatgatgatggttggggatgatCCATGGCTTGAATTTTGTAGCATAGTGAGGAAAATTTTTATCTACACTGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGAATTCCAATCAATGAAGAAGTTAAACCTAGCAAAATGGATTCTGAAGCAGTTGTCAATCCTGAGGATCAGTCATCTATTGTGGGGCCTGATTGCTGA 1992 0.4342 MASAAPGATNDALYKELWHACAGPLVTLPCEGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQNEVMSPDDPLPEPARCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTPPTNSQPSQRNKRSRPPILSSTMPDSSLQGVWKSPVESAPFSYRDHQHGRDVYSSPKFNSTATGFLGFGGNCSASNKSIYWSSRMENSTESFSPVALQESGEKRQGTGNGCRLFGIQLLENSNEESLPMVTLSGRVGDDGPLPSLDAESDQHSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGIPINEEVKPSKMDSEAVVNPEDQSSIVGPDC 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02834 663 MobiDBLite consensus disorder prediction 641 663 - -
Cca08g02834 663 SUPERFAMILY CAD & PB1 domains 541 616 - -
Cca08g02834 663 MobiDBLite consensus disorder prediction 348 383 - -
Cca08g02834 663 MobiDBLite consensus disorder prediction 484 516 - -
Cca08g02834 663 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Cca08g02834 663 Gene3D - 534 628 - -
Cca08g02834 663 Gene3D - 115 220 IPR015300 -
Cca08g02834 663 SMART B3_2 118 220 IPR003340 GO:0003677
Cca08g02834 663 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Cca08g02834 663 PANTHER AUXIN RESPONSE FACTOR 1 10 625 - -
Cca08g02834 663 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca08g02834 663 Pfam AUX/IAA family 536 629 IPR033389 -
Cca08g02834 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 625 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca08g02834 663 Gene3D - 281 353 - -
Cca08g02834 663 ProSiteProfiles PB1 domain profile. 539 632 IPR000270 GO:0005515
Cca08g02834 663 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Cca08g02834 663 MobiDBLite consensus disorder prediction 501 516 - -
Cca08g02834 663 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02834 Cca-Chr8 62661782 62667825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02834 7 657 B3 DNA Binding Superfamily AT1G59750 72.409 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca08g02834 AUX_IAA 1.6e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02834 K14486 - gmx:100793224 1290.79