Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02832 ATGATAAAAATGTTGTGGGGAGGGACggaggagaagagcaacagaaaaatggaagagggtaagagtcgaaaggagaagaggaaggcaatgaagaaaatgaaacggaagcagacaaggagggaggcggcggagagggagaggcgggaggaagaggagcggctgaaggaTCCCGAGGAGCAGAGGCTGATGCAGTTGGCGGAGCAGCAGGAGGTGGAGAGAATGCAGAGGGAAAGGATCCTGTTCGAGGAGAGAGAGAGGGCTTGGATGGAGAGGATCATCCAAAAACAAGATGACCTGGAGGAgaaggagaaggagaaggaggaccaagacgaagacgaaTATCAATACGTCCAGGACGAAGGCCCTCCGGAGATTATCTGGCAAGGAAACGAGATCATCTTCAAGAAGAAACAGCTCAGAGTTAGGGTTGCGGACAAGAATGAAAACCACCAGGACAAGAATAATAGACCTGTATCAAATCCCTTACCCCcggaatcggaatcgcaatcgcaatcgcaatcggagtcacaCACTCACATGCTCCAGGATGTTGCTCAACATATACCCAATTTCGGAACTGAGCAGGATAAAGCTCATTGCCCTTTTCATCTTAAAACCGGAGCATGTCGTTTTGGTCTACGCTGCAGCAGAGTCCATTTTTACCCTGATAAGTCATCCACCCTCCTTATCAAAAACATGTACAACGGTCCTGGCCTTGCATGCGACCGGGACCAAGATGAGGGCCTTGAGTATACAGATGAAGAGGTTGAACGATGTTTTGAAGAATTTTATGAGGATGTTCACACAGAGTTCCTGAAGTTTGGGGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTATAAATTGTTGGATTCTGCTTTGCTTGCATATAACTCGGTGAACGGTCGCTACTTTGCTGGGAAACAGGTAAGTTGTCAATTTGTTAACTTGACGAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCAGGTTTCAAGACTTGTTCTCACGGAACAGCATGCAATTTTATCCACTGTTTTCGCAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAGTATTGGGTAAAAAAGATGGTCGCTTTATTTGGTTATTCTGTTGATTATGAGACTTCAGGGGAGCGAGGAAATTTGAGTTTGCCAAAGAATATATCAAAAACAGATTCTGACAGGTACCACCACTCTAGAAGGTCGAGATCTAGGGAGATGGATCAGTTAAATTGTGGTCATTCTAGTAGAAGAAAACAGGATGAAAGAAAGCCAAGAACTCCTGATAAGGAACGAAATGCCAACTTCAAAAACAAGCATAAAAGGAAATCCAGAAGCAGAACTCCCGATGCTGATCCTGACAAGGAATTGTTAGAAAAAGAGGAAAATAAGGAAAGGCACCGCAAACACACCTGGAATAGTTCATTTAACAGGAACAGGGGTAACAATAAAAGCCGTGAAGAGGATTCTGATGTGGATTGGGATACTGGGGACAATGGAAAACAGCATCGCAGAGAAGGAAGAAACTCAAGAAAGTGGAACAGAGATATTAGAGTCTGGATTTCTGAGGCTGAAGAAGATAGGAATAGTGATAGAGATGATAAAATGCGCCATATTAGCAAAAGTAAAAGATCAAGACATCGGAGTGGCGATGCTTCTGAATCTAACAAAGATTTGCTTGGTAGAGGAGAGATGGAAACACACCATGATTACTCTAGGAAGAGCTCGAAGCACATAAGATCTGGTCTTCAGGACGACTATATATACTATGAGAATGAAAATGACAAAGATGATGGAGGAAGGCCTCCGAGGGAGAGTTACAAACGAGAACATCGTCACAACAAGAAGAGATCCGAACATTAG 1923 0.3822 MIKMLWGGTEEKSNRKMEEGKSRKEKRKAMKKMKRKQTRREAAERERREEEERLKDPEEQRLMQLAEQQEVERMQRERILFEERERAWMERIIQKQDDLEEKEKEKEDQDEDEYQYVQDEGPPEIIWQGNEIIFKKKQLRVRVADKNENHQDKNNRPVSNPLPPESESQSQSQSESHTHMLQDVAQHIPNFGTEQDKAHCPFHLKTGACRFGLRCSRVHFYPDKSSTLLIKNMYNGPGLACDRDQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKYWVKKMVALFGYSVDYETSGERGNLSLPKNISKTDSDRYHHSRRSRSREMDQLNCGHSSRRKQDERKPRTPDKERNANFKNKHKRKSRSRTPDADPDKELLEKEENKERHRKHTWNSSFNRNRGNNKSREEDSDVDWDTGDNGKQHRREGRNSRKWNRDIRVWISEAEEDRNSDRDDKMRHISKSKRSRHRSGDASESNKDLLGRGEMETHHDYSRKSSKHIRSGLQDDYIYYENENDKDDGGRPPRESYKREHRHNKKRSEH 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02832 640 MobiDBLite consensus disorder prediction 1 62 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 566 601 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 542 558 - -
Cca08g02832 640 ProSiteProfiles Zinc finger C3H1-type profile. 330 360 IPR000571 GO:0046872
Cca08g02832 640 MobiDBLite consensus disorder prediction 93 122 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 154 179 - -
Cca08g02832 640 ProSiteProfiles Zinc finger C3H1-type profile. 194 222 IPR000571 GO:0046872
Cca08g02832 640 SMART c3hfinal6 330 359 IPR000571 GO:0046872
Cca08g02832 640 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Cca08g02832 640 MobiDBLite consensus disorder prediction 501 530 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 410 455 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 465 492 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 609 627 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 397 530 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 9 25 - -
Cca08g02832 640 Coils Coil 85 112 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 103 118 - -
Cca08g02832 640 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 331 358 IPR000571 GO:0046872
Cca08g02832 640 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 219 IPR000571 GO:0046872
Cca08g02832 640 MobiDBLite consensus disorder prediction 145 179 - -
Cca08g02832 640 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 328 IPR000504 GO:0003723
Cca08g02832 640 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 23 636 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 SMART rrm2_1 243 324 IPR003954 GO:0003676
Cca08g02832 640 Coils Coil 26 60 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 542 640 - -
Cca08g02832 640 SUPERFAMILY RNA-binding domain, RBD 260 328 IPR035979 GO:0003676
Cca08g02832 640 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 23 636 - -
Cca08g02832 640 CDD RRM_U2AFBPL 227 327 - -
Cca08g02832 640 Coils Coil 136 156 - -
Cca08g02832 640 MobiDBLite consensus disorder prediction 37 62 - -
Cca08g02832 640 PRINTS U2 auxiliary factor small subunit signature 200 219 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 PRINTS U2 auxiliary factor small subunit signature 219 239 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 PRINTS U2 auxiliary factor small subunit signature 257 272 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 PRINTS U2 auxiliary factor small subunit signature 285 307 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 PRINTS U2 auxiliary factor small subunit signature 312 336 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 PRINTS U2 auxiliary factor small subunit signature 350 362 IPR009145 GO:0000398|GO:0003723|GO:0089701
Cca08g02832 640 Gene3D - 225 326 IPR012677 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca08g02832 zf-CCCH 1.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02832 K24273 - gmx:100789091 784.637