Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02829 ATGTCTGAAGAGGCTGGATCTATGTTGGTAGTTTATGATGATCCCTCTGACCAACGCTCACTTTCTTTGGATGATGCAAGCAGTGCAGAGGAGTCTCCTGATGAAACCAGGCTCTCCTTGGAAACAACAAATGATGCTATTCCATATATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCCAAAAGAAGTGGCTTCTCAATTAGACGTCACCGGACAGAGGGAAAAGATGGTGTTGGAAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGAAACACTCCTGTCAAAACATCAACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGCTGTGGGTGTCAGGCTTACATGCGGATTAGCAAAACCACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCACCATAATCATGAACTTTTAGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATCTCTGATGCTGACAAAAACCGAATACTCATGTTTGCCAAAACAGGGATCTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAAGATGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTGGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATACAAACAACCGTTTGGAGAATATTGCCTGGTCTTATGCTTCATCAATCCAATTATATGATATATTTGGTGATGCTGTGGTGTTTGATACAACACACCGCCTAACTGCATTTGACATGCCACTAGGGATATGGGTCGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACTCTTCTACGGGATGAAACTGTGAGGTCATTTTCCTGGGCACTAAAGGCTTTCTTAGGGTTCATGAATGGGAAGGCTCCACAGACTATATTAACCGATCAAAATATATGTCTCAAAGAAGCACTATCCACGGAAATGCCAGCAACAAAACATGGTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGGTACAATGAGTGGAAGGCTGAATTTTATAGACTGTATAATCTTGAGTCAGTTGAGGATTTTGAATTAGGCTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGCTCACGCTCCCTTTGGGCATTGCCATTTTTGAGAAGCCATTTTCTTGCTGGAATGACTACAACTGGTCAGTCGAAGTCAATTAATGCTTTCATTCAACGATTTCTGAGTGCACAGACCCGCCTTGCACACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAAAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCCATGGAATCACACGCTGCCACAATCCTTACCCCTTTTGCCTTTTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCCTCTTTTTCAATTGAAGATGGTTTTCTTGTGAGGCACCACACAAAAGCTGAGGGAGGTCGTAAAGTTTATTGGGCCCCTCAAGAAGGAATTATAAGTTGTAGCTGCCACCAGTTTGAGTTCACTGGTATTTTGTGTCGGCATTCTCTTAGAGTTCTTTCAACGGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCTGTTCGATGGCGTCGAATCAGCATGCCCTCTTCTAAGCTTCTTCAAAGTGCACCAAATGATCATGCTGAAAGAGTCAAGTTATTACAAAATATGGTTTCATCTCTTATGACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACAAGTTTCGATCCTTCTGTCTCGCATAAGAGAGCAACCAATATCGTTACAAGCTGGACGAGATATTTCTTCCATTAGTAGGAATCTTTGA 2040 0.4088 MSEEAGSMLVVYDDPSDQRSLSLDDASSAEESPDETRLSLETTNDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDTNNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPATKHGFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPVRWRRISMPSSKLLQSAPNDHAERVKLLQNMVSSLMTESAKSKERLDIATEQVSILLSRIREQPISLQAGRDISSISRNL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02829 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 12 660 - -
Cca08g02829 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 660 IPR031052 GO:0006355
Cca08g02829 679 Pfam MULE transposase domain 278 370 IPR018289 -
Cca08g02829 679 SMART 26again6 564 591 IPR006564 GO:0008270
Cca08g02829 679 MobiDBLite consensus disorder prediction 1 42 - -
Cca08g02829 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Cca08g02829 679 Pfam SWIM zinc finger 560 587 IPR007527 GO:0008270
Cca08g02829 679 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02829 Cca-Chr8 62608870 62614561 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca08g02829 MULE 3.6e-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02829 - - gmx:100810717 1359.74