Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02827 ATGCCAATAGTGTCAAGTAGAAGACCTTCTAAGGGTAGAAAGGCGTATAAACGATATTGTATCGGTGTGGGCTTGTCTGAAACCCTAACTCAACTGTGCGCAACTTCATCGCCGCTGCCAATTCAGTTTTCTACAATGGGACGGAAAAAGACAGAGGATACAGGAACATCTGCAAAGGGTAAGTCAAGTAGCAAAGATGCTCCTAAGAAGGAAAAATTCTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTGCCTCTAGTAAGCCAAAGCCAAAATCTGCTCCAAAAGCTTCGACATACACTGATGGCATCGATCTTCCTCCTTCTGACGATGAAGATGATGATCTCTTGGAAGAGGAAGAACAGCAAAATAATGTGTCCAAACGGTCCAGTCAGCAGCAAAGACCTGATTTGAAGCCGCTTGAAGTGTCTATTGCTGACAAAGAGTTGAAGAAGCGTGAAAAGAAGGATCTTTTAGCTGCCCATGCTGCTGAGCAAGCAAAGAAGGAAGCTCTTAGGGATGATCATGATGCTTTCACTGTTGTGATTGGAAGCCGGGCTTCAGtgcttgatggagatgatgacgctgatgctaatgTCAAAGATATAACAATTGAAAATTTCTCTGTGTCTGCTCGTGGTAAAGAACTTATGAAGAATGCATCAGTGAGGATATCTCATGGGAAGAGATATGGTTTGGTTGGGCCCAATGGAATGGGCAAGTCCACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAAGTGGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTGAAAATTCGACAAGAAGTTGCTTCTCTGCAGAATGCAGCTTCTGTTGAAGAAAGTGTAGACAAAGATAATGACGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAAGCATCAAAGATTTTAGCTGGTTTGGGTTTTACAAAGGATATGCAAGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTTTTATTGCTTGATGAGCCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAAAAAACTTTGGTGGTTGTCTCTCATGATAGGGATTTTCTCAATACAGTGTGTTCTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGGGGAAATTTTGATGATTTTGAAAGTGGGTATGAACAACGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAACCGTGCTCAACAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAGGCAAGGGCAAGAGCAAGGTGGATGAGGATGAGGCCCGACCAGAGGTACCTCAGAAGTGGAGGGATTACAGTGTGGAGTTCCACTTTCCTGAACCTACTGAACTCACCCCTCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACGTTGCTGAACCTTCTCGCTGGTGATTTGGTTCCTTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACACCTGTGCAGTATCTTCTCCGGCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGACTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCAATCTCCATGTCAAAACCACACATTTTGTTGTTAGATGAACCCACGAATCATCTGGACATGCAAAGTATCGATGCTTTGGCTGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGGTTGATATCACGCGTATGTGAAGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAGGATGGTACTTGCAAAACTTTCCCAGGAACATTTGAGGATTACAAGGAGGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGACTGA 2316 0.4301 MPIVSSRRPSKGRKAYKRYCIGVGLSETLTQLCATSSPLPIQFSTMGRKKTEDTGTSAKGKSSSKDAPKKEKFSVSAMLASMDEKPDKPKKVSASSKPKPKSAPKASTYTDGIDLPPSDDEDDDLLEEEEQQNNVSKRSSQQQRPDLKPLEVSIADKELKKREKKDLLAAHAAEQAKKEALRDDHDAFTVVIGSRASVLDGDDDADANVKDITIENFSVSARGKELMKNASVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANVELVKIRQEVASLQNAASVEESVDKDNDEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKGKGKSKVDEDEARPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTCKTFPGTFEDYKEDLLREIKAEVDD 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02827 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 755 IPR027417 -
Cca08g02827 771 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 544 769 IPR003439 GO:0005524
Cca08g02827 771 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 212 465 IPR003439 GO:0005524
Cca08g02827 771 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 50 771 - -
Cca08g02827 771 Coils Coil 762 771 - -
Cca08g02827 771 MobiDBLite consensus disorder prediction 478 519 - -
Cca08g02827 771 SMART AAA_5 236 441 IPR003593 -
Cca08g02827 771 SMART AAA_5 570 746 IPR003593 -
Cca08g02827 771 Gene3D - 507 770 IPR027417 -
Cca08g02827 771 CDD ABCF_EF-3 212 442 - -
Cca08g02827 771 ProSitePatterns ABC transporters family signature. 369 383 IPR017871 GO:0005524
Cca08g02827 771 MobiDBLite consensus disorder prediction 115 129 - -
Cca08g02827 771 Coils Coil 461 481 - -
Cca08g02827 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 449 IPR027417 -
Cca08g02827 771 MobiDBLite consensus disorder prediction 44 155 - -
Cca08g02827 771 Coils Coil 164 184 - -
Cca08g02827 771 CDD ABCF_EF-3 544 746 - -
Cca08g02827 771 PANTHER - 50 771 - -
Cca08g02827 771 MobiDBLite consensus disorder prediction 44 62 - -
Cca08g02827 771 Coils Coil 288 308 - -
Cca08g02827 771 Pfam ABC transporter 561 696 IPR003439 GO:0005524
Cca08g02827 771 Pfam ABC transporter 228 397 IPR003439 GO:0005524
Cca08g02827 771 Gene3D - 209 493 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02827 Cca-Chr8 62594146 62601733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02827 543 722 Calmodulin-binding Proteins AT2G36910 30.583 5.00e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02827 K06184 - gmx:100806865 1189.48