Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02825 ATGGGTTGTATATGCTCTAAAGGAAAAGATGGGAAAGAATCGAAGCATTTTCCTTTCCATTTGGGGAGGAGAGGTGTATCAGAGAATGATACTACTGCTCGCCTCATATCCAATGGCAATGCCATTGGGAATGGGAACGGAACGGAACCCTCCACCCCAGTTTCATCGGATGAACAGGACAAGAATAAGAATACAAATGGGGTGGTGGCAATGGAATCAACGGCAACACCTAGGCTGTGTAGGGTATACAGTGTCACGAGAGGGGAAAGAGGAGCGCAGGTTCTTGCTGGTTGGCCCTCTTGGCTAACTGCAGTTGCTGGCGAAGCCATTAGTGGTTGGGTGCCCCGCAGAGCTGACTCATTTGAGAAGTTGGATAAGATTGGCCAAGGAACTTACAGCAGTGTTTACAGAGCTCGTGATCTTGAAACAAATACAGTTGTTGCATTGAAAAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTCCGTTTTATGTCAAGAGAAATTATTGTGCTGCGAAGGCTCGATCATCCAAATGTCATGAAGCTTCTAGGCATGATTACTTCAAGGGTTTCTGGTAGCTTGTACCTTATTTTTGAATATATGGAGCATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTTACCGAAACACAGATCAAGTGTTACATGCAACAGCTTCTTTGCGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTGCTTGACGGTAATGGCAATCTGAGAATCGGTGATTTTGGACTGGCAACTTTGTTTCAGCCATCTCACGGGCAGCCTTTAACAAGTCGTGTAGTAACTTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGGAAGCCTATAATGCCTGGACGGACAGAGGTGGAGCAACTTCATAAAATCTTTAAACTTTGCGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCGCATGCAACAATTTTTAAACCTCAACAACCTTACAAACGTGTTATTTCTCAGATTTTCAAGGATTTTCCTTCATCTGCGCTGGGCATCTTGGATGTCCTTCTTGCTGTAGAACCGAAAGATCGAGGAACTGCATCTTTTGCACTTCAGCATGAGTTCTTCACAGCAAATCCACTTCCTTGTGACCCATCAACTTTGCCAAAGTACCCACCAAGTAAGGAGTTTGATGCCAAAATTCGTGATGAGGAAGCTAGAAGACAAAGAGCAGCAAATAAAGGACATGAACATGAATCAGTTGGGAAAAATTTTAGAGAGTCTAAAGCTGTGCCAATACCTGATGCTAATGCTGAGTTTGAGGCAACAATGGGGAGGCAAGGACATTCTAAGTGCAATACTGAGAAGTACAATCCTGAAGAGGATGGTGGTGTTGGCTACCCTCGTGAACCTGCAAAGTCAAGAGCACTCAATGTATTCTCTCATTCTGGCCAGTCAATGCATCCAAGTGTATATGGATCCTCTCGCAATATGAATTCAAAAGAGGGAGACGTTCCTGATCAAGATTTTAGATCAAGAAAGTCTGAGTTGAGAAAACAAAATTCCTTTTGGCACGGTAGCACTGCAAAAGTGTCAAGATTTACTAATTCAGTTGCAGTTCGAGGAGATTCACGGCTTGATATGAGTGGAGACCGTAGTGTGAATTCACAATGGTCAGAAGATCACTTTGGTATGAGATATAACCATCTTGCCGACGGTGAGTCCAACCAATTGTTGAATGGACCCAAATCTTCGCCCAAGAAGGACTTTCATTCTACTGGGAAGGATCGTACCAAGGGCTATTCTAACAAAAATGCTCGCATGCACCATTCTGGACCGTTGCTGGCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAACACGAAAGGCAAATCCAACTGGCTATCCGCAAAGCTCGTTTGGGCAAGGACAAGGCCAAAAAGGCTGACATGAGAATTGCCTAA 2052 0.441 MGCICSKGKDGKESKHFPFHLGRRGVSENDTTARLISNGNAIGNGNGTEPSTPVSSDEQDKNKNTNGVVAMESTATPRLCRVYSVTRGERGAQVLAGWPSWLTAVAGEAISGWVPRRADSFEKLDKIGQGTYSSVYRARDLETNTVVALKKVRFANMDPESVRFMSREIIVLRRLDHPNVMKLLGMITSRVSGSLYLIFEYMEHDLAGLAAIPGIKFTETQIKCYMQQLLCGLEHCHSRGVMHRDIKGSNLLLDGNGNLRIGDFGLATLFQPSHGQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELFVGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVISQIFKDFPSSALGILDVLLAVEPKDRGTASFALQHEFFTANPLPCDPSTLPKYPPSKEFDAKIRDEEARRQRAANKGHEHESVGKNFRESKAVPIPDANAEFEATMGRQGHSKCNTEKYNPEEDGGVGYPREPAKSRALNVFSHSGQSMHPSVYGSSRNMNSKEGDVPDQDFRSRKSELRKQNSFWHGSTAKVSRFTNSVAVRGDSRLDMSGDRSVNSQWSEDHFGMRYNHLADGESNQLLNGPKSSPKKDFHSTGKDRTKGYSNKNARMHHSGPLLAPEDNLEEMLKEHERQIQLAIRKARLGKDKAKKADMRIA 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02825 683 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02825 683 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02825 683 MobiDBLite consensus disorder prediction 617 632 - -
Cca08g02825 683 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Cca08g02825 683 MobiDBLite consensus disorder prediction 472 495 - -
Cca08g02825 683 MobiDBLite consensus disorder prediction 512 547 - -
Cca08g02825 683 MobiDBLite consensus disorder prediction 602 641 - -
Cca08g02825 683 MobiDBLite consensus disorder prediction 36 68 - -
Cca08g02825 683 Gene3D Transferase(Phosphotransferase) domain 1 209 445 - -
Cca08g02825 683 SUPERFAMILY Protein kinase-like (PK-like) 114 413 IPR011009 -
Cca08g02825 683 MobiDBLite consensus disorder prediction 602 616 - -
Cca08g02825 683 CDD STKc_CDK9_like 121 405 - -
Cca08g02825 683 MobiDBLite consensus disorder prediction 512 530 - -
Cca08g02825 683 PANTHER CELL DIVISION PROTEIN KINASE 69 671 - -
Cca08g02825 683 Coils Coil 647 667 - -
Cca08g02825 683 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02825 683 PANTHER KINASE CDK9, PUTATIVE-RELATED 69 671 - -
Cca08g02825 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cca08g02825 683 MobiDBLite consensus disorder prediction 531 547 - -
Cca08g02825 683 Gene3D Phosphorylase Kinase; domain 1 116 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02825 Cca-Chr8 62580465 62585813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02825 113 443 Core Cell Cycle Gene Families AT5G10270 49.133 9.57e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca08g02825 Pkinase 4.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02825 - - gmx:100805055 1107.82