Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02817 ATGGCGTCTGCTAGCCTCGGAAGTGGTGGGGTCGGCAGTTCCAGGTCTGTTAATGGCGCCTTCAGGGGCTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGAGGTTGAGAgaccatgaccatgaccatgaccatgaccatgaccatgaccatgaAGACGATAGAGATAGTGAGCCTGACATCATTGATGGTGTGGGTGCCGAGACAGGGCACGTGATAAGAACCAGCATTGGTGGTCGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTGCCGAACATGTGGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCTAAATGTAGAGAAACAGGAGAGATTGTGGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAAAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTAAGGCATTGTTTCTTTTCAACGACTGACAAGGAAGAGGTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGCATCGCAAGGAGCTATAGCAGGATTAACCAGCGGATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCACCGTGACATCAAGCCTCAGAACCTACTTGTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGCTGGTGAAAGGAGAACCCAATGTTTCTTACATCTGTTCAAGATACTACCGAGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCTATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCGACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACAGAATTTAAGTTTCCGCAGATAAAACCACATCCATGGCACAAGGTCTTTCAGAAGCGTTTACCCCCAGAAGCAGTGGACCTTGTTTGTCGGTTTTTTCAGTACTCTCCCAATTTGAGATGCACCGCAGTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACTCGCCTTCCTAATGGTCGACCACTTCCACCTCTGTTTAATTTTAAACCTCAAGAACTTTCTGGTATACCCCCCGATGTCATCAATCGGCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1299 0.4288 MASASLGSGGVGSSRSVNGAFRGSSSSVDWLGREMLEMRLRDHDHDHDHDHDHDHEDDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTAVEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02817 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Cca08g02817 432 Pfam Protein kinase domain 96 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02817 432 ProSitePatterns Protein kinases ATP-binding region signature. 100 124 IPR017441 GO:0005524
Cca08g02817 432 MobiDBLite consensus disorder prediction 1 25 - -
Cca08g02817 432 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 429 - -
Cca08g02817 432 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02817 432 Gene3D Phosphorylase Kinase; domain 1 79 173 - -
Cca08g02817 432 CDD STKc_GSK3 89 381 IPR039192 -
Cca08g02817 432 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02817 432 Gene3D Transferase(Phosphotransferase) domain 1 174 422 - -
Cca08g02817 432 SUPERFAMILY Protein kinase-like (PK-like) 93 405 IPR011009 -
Cca08g02817 432 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 429 - -
Cca08g02817 432 MobiDBLite consensus disorder prediction 44 68 - -
Cca08g02817 432 MobiDBLite consensus disorder prediction 44 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02817 Cca-Chr8 62518753 62526037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02817 100 386 Core Cell Cycle Gene Families AT1G76540 35.786 1.10e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca08g02817 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02817 K03083 - gmx:100799387 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02817 08 62518753 62526037 Cca09g01914 09 44053387 44061324 PCT