Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02815 ATGGGGGAGGAGTCACCGAAGAATAAAGTGAAATTCCTGTGCAGCTACGGGGGGAAGGTGCTTCCACGTCCGTCGGACGGGCTGCTGAGGTATGTGGGGGGGGAGACACGGGTGGTGTCGGTGCCTCGGCAGGTGACATTAAAGGATCTGATGAACAAGGTAAACAACATGGTGGAGGCTGACATGGTGCTAAAGTACCAGCTCATGCCAGAAGATCTGGACGCCCTCGTATCGGTAAGAACGGAGGAAGACGTAAAGCACATGATCGAGGAGCACGATCGCCACCACACCGGAAACGGCTTGCTCCGGGCCTTCCTCTTTCCTCCTTCCAAGCCTACTTTGCTTCCCACCGAGCCCTATCCTTTGGAGCAGCGTTACATCGACGCAATCAATGGCATCACCCGCACAAGCCCTAAGGCGCCCAGGGGTTCAACGTGTTCTTCCCCTAAATCAAGCTCTCCAGAATACTCTCCTCGGTatgcgaatgcaaatgtgaatgctcttgctcatgccactgcgcacgtcatgcAGAAAGTGAGAAGCTCTCCCAGCCTCACCAACATGGATCACCAGCATCACCATCCTTATACGTCTAGACCGCCGCATGATCCTCAaatgggaatgggaatgggaatgggaaGGCTTGGTGGAAGGGCTCCCGCTTTTAATTATTACTactccaacactaacactaacaccaacaccaacaccagacaAACCCATAATCACAGAGGATACGCCTTCCAAGACGATTCTGCCTCCTACACCATTGAAAGACTTCAGACTGAGGGGGAAGGTGCTTCCACGTCTGTCGAACGGGCTGCTGAGGTACGTGGGGGGAGACACGGGTGGTGTCGGTGCCTCAGCAGAAGATCTGGACGTCCTCGTATCAGTAAGAACGGAGGAAGACGTAAAGCACATGATCGAGGAGCACAAAATGGCTTGCTCCGCGCCTTCCTCTTTCCTCCTTCCAAGCCTGCTTTGCTTCCCATACATCGACGCAAGGTGCCCAGGGATTCAACGTGTTCTTCCCCTAAATCAAGCTCTCCTGAATACTCTCCTCGATATGCGAATGTGAATGCGAATGCTCTTGCTCATGTCACTGCGCACGTGATGCAGAGAGTGAGAAGCTCTCCAAGCCTCACCAACATGGATCATCAGCATCACCATCCTTATACGTCTAGACCGCCACATGATCCTCAAATGGGAATGAAAATGGGAAGGCTTGGTAGAAGGACTCCCGCTTTTAATTactactctaatactaacactaacaccaacacCAGACAAACCCACAATCACAGAAGAAACGCCTACCATTGA 1323 0.4694 MGEESPKNKVKFLCSYGGKVLPRPSDGLLRYVGGETRVVSVPRQVTLKDLMNKVNNMVEADMVLKYQLMPEDLDALVSVRTEEDVKHMIEEHDRHHTGNGLLRAFLFPPSKPTLLPTEPYPLEQRYIDAINGITRTSPKAPRGSTCSSPKSSSPEYSPRYANANVNALAHATAHVMQKVRSSPSLTNMDHQHHHPYTSRPPHDPQMGMGMGMGRLGGRAPAFNYYYSNTNTNTNTNTRQTHNHRGYAFQDDSASYTIERLQTEGEGASTSVERAAEVRGGRHGWCRCLSRRSGRPRISKNGGRRKAHDRGAQNGLLRAFLFPPSKPALLPIHRRKVPRDSTCSSPKSSSPEYSPRYANVNANALAHVTAHVMQRVRSSPSLTNMDHQHHHPYTSRPPHDPQMGMKMGRLGRRTPAFNYYSNTNTNTNTRQTHNHRRNAYH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02815 440 CDD PB1_UP2 13 107 - -
Cca08g02815 440 MobiDBLite consensus disorder prediction 133 157 - -
Cca08g02815 440 PANTHER OS05G0427100 PROTEIN 3 227 - -
Cca08g02815 440 MobiDBLite consensus disorder prediction 415 432 - -
Cca08g02815 440 Pfam PB1 domain 29 108 IPR000270 GO:0005515
Cca08g02815 440 MobiDBLite consensus disorder prediction 137 157 - -
Cca08g02815 440 PANTHER OS05G0427100 PROTEIN-RELATED 3 227 - -
Cca08g02815 440 MobiDBLite consensus disorder prediction 184 203 - -
Cca08g02815 440 SMART PB1_new 24 109 IPR000270 GO:0005515
Cca08g02815 440 Gene3D - 30 107 - -
Cca08g02815 440 MobiDBLite consensus disorder prediction 381 440 - -
Cca08g02815 440 MobiDBLite consensus disorder prediction 331 354 - -
Cca08g02815 440 SUPERFAMILY CAD & PB1 domains 25 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02815 Cca-Chr8 62509573 62513084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02815 9 145 MAP Kinase Kinase Kinase AT3G46920 43.919 8.04e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02815 - - vun:114186951 290.426