Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02798 ATGGAACTATCAGATTTGCAAAACAACAAGCAGAGCAGCAGCAACACAGGTGGGAGCActcatcctcatcctcaacctcatcctcatcctcatccgcatccccatccccatccCCACCATCACCAACAAtcttcttcttcttcttcttctacttcACACCTTGTGGTCCCTTTCGATGGAAGACCAAACActtcttctcccttcatcacctcctccacctcttcctcctccaattcctcttcatcgtcttcctccATCGACGCCTCCCTAGCCATCGCAACCAGATCTGACGATTCCGCCAAGAAGACAACCCAACATCTTTCCACCACCGCCGCGCCCAAGCGATCCACCAAGGACCGCCACACCAAGGTCGAGGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCCGCTAGGGTTTTCCAACTCACTCGTGAATTGGGCCACAAATCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCGATCGGCGCCGCCACCGGCACCGGCACCATCCCCGCCAACTTCTCCTCGCTCACCGTCTCCCTCCGCAGCAGCGGCTCCACGCTCTCGGCGCCGCCCTCCAAGTCAGCACCGCACACCTTCCACGGCGCCCTCGCACTCGCTCACCACCCATACGAAGAAGCCTTTCAACAACACACGGCGCTGCTAGGGTTTCACCCTcaccaccaccaccaccagcaccagcaccagcaccCGCAGCAACACCCACACCCACACcaacatcaacatcaacatcaacatcaacatcCGCAGCAGCAACTTCTCTCCGCCGATCAAATCGCCGAAGCTCTCCCCAGCGGCGGTGACTCCGGCGAGAGCTACCTCCGGAAACGTTACCGAGAAGATCTGTTCAAAGACGATAACATCAACAACCAGTCGCAGAACGAGAGCGGGGACGGGTCTTCGCCGAAAACTCCGAACCTACAATTACCGAAGCAGCAGCAGACCGAAGCTGGGCCTGGGCTTCACCGGCCCGCGAGCTTACTTCCGGCGACCGCGATGTGGGCCGTGGCGCCCGCTCCCGCTAGTGGGCCCGCGGGGAGCACAATTTGGATGCTTCCAGTGACCGCGGCGGCCTcttcttcttctggtgcggctgcttcttccgcttctgcttcggcatctTCGGAGACTCAGATGTGGCCTTTTACTCAGTCAGGTTTCATGCCAAGGTTCAATCTTCCCGGTGCGCTTGAATTCCAAGGCGCACGTGCGGGCTCTCTACAATTGGGCTCCATGCTAATGCCGCCGCAGCCCTCTCAGCATCTGGGCCTCGCCATGTCTGACTCCAACTTGGGCATGTTGGCGGCCCTTAATGCTTACACTAGGGCTGGTTTCAATATTAATTCTGATAATcatcacatggagcatccacatcaacatcatcatcaacatcaccaccaacctcaacCTAGTGAGAGTGGAGAGGATGCTCCTAATAGCTCCCAATGA 1491 0.4715 MELSDLQNNKQSSSNTGGSTHPHPQPHPHPHPHPHPHPHHHQQSSSSSSSTSHLVVPFDGRPNTSSPFITSSTSSSSNSSSSSSSIDASLAIATRSDDSAKKTTQHLSTTAAPKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIGAATGTGTIPANFSSLTVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYEEAFQQHTALLGFHPHHHHHQHQHQHPQQHPHPHQHQHQHQHQHPQQQLLSADQIAEALPSGGDSGESYLRKRYREDLFKDDNINNQSQNESGDGSSPKTPNLQLPKQQQTEAGPGLHRPASLLPATAMWAVAPAPASGPAGSTIWMLPVTAAASSSSGAAASSASASASSETQMWPFTQSGFMPRFNLPGALEFQGARAGSLQLGSMLMPPQPSQHLGLAMSDSNLGMLAALNAYTRAGFNINSDNHHMEHPHQHHHQHHHQPQPSESGEDAPNSSQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02798 496 Pfam TCP family transcription factor 116 264 IPR017887 -
Cca08g02798 496 MobiDBLite consensus disorder prediction 301 329 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 233 259 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 1 84 - -
Cca08g02798 496 ProSiteProfiles TCP domain profile. 117 171 IPR017887 -
Cca08g02798 496 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 496 IPR005333 GO:0003700
Cca08g02798 496 MobiDBLite consensus disorder prediction 96 112 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 462 496 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 113 128 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 295 338 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 96 128 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g02798 496 PANTHER TRANSCRIPTION FACTOR TCP8 33 496 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 233 267 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 26 40 - -
Cca08g02798 496 MobiDBLite consensus disorder prediction 41 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02798 Cca-Chr8 62360289 62362610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02798 86 458 TCP Transcription Factor Family AT1G58100 43.358 4.81e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca08g02798 TCP 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02798 - - vra:106776202 583.948