Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02794 ATGGCTAACAAcatcttcattttcatattcttctttatcatcatcttcatatctccatcttcttATGGATACGATTCGTTGGATCCTTTTGGGAACATCACCGTCACATGGGATTTTTTGTCAGATAATGGGGATACATTCGACGTAAAAGTATCAATATACAACTTCCAACTATTTCGCCACATAGAGGAGCCAGGTTGGAAATTGGGTTGGGCATGGAAAGGTGATGAGGTGATATGGGCAATGTTGGGAGCAGAGGCAACTGAGGAAGGAAATTGCACAAGATTTAGAGGACAACAGAAACCTCATTGTTGTCAGAAAAAGCCAGTTATTATTGATCTTATGCCTGGAACCCCATATAACATGCAATCTGCAAATTGTTGTAAAGGAGGGGTTTTAACATCTATGACACAAGATGTTTCCAAACATGGTGCAACCTTCCAAATGAATTACATTAAAGCATCAACTTCCAATTCTAGCATGCCAGAAAATTTCACACTTGGAGTTTCTGGCTATAGTTGTGGGACACCATTTCAAGTATCGCCAACCAAGTTTACCAAAGATGGACATCGATGGCAACAAGTCTTGGAGACATGGAATGTGACTTGTATTTACTCCCAGTTTCTAGCATCACCTGCCCCAAAATGTTGTGTCTCCTTGTCTGCATTCTATAATAGTACCATTGTTCCTTGCCCAACATGCAGTTGTAATTGCCAGGGGCTACCCGGAGCTGATTGTGTGAATTCTGACAAGACTTCAGTGTTAAAACTACCACAAACAAACCGCGGAGAAGTAGCACCACCAATTATCAGATGTTCACATCATATGTGCCCCATTCGTATTCACTGGCATGTGAAACAAAGTTACAGAAAGCATTGGCGGGTTAAAATCACAATCACAAACCTCAACTTTGTCAAAAACTATTCCCATTGGAATTTGGTGGTGTTACACCCCAACTTGCAAAGCGTAACCCAAGTTTTTAGTTTCAACTACCAACTCCTACAAAATTATGGAAATTTTAATGACATAGGAATGTTTTGGGGGCTACCATACTATAATGACATGTTGTTGACACATGGTGTCAATGGGAATGTACAAACAGAGGTGTTGTTGCATAAAGATGAAGGAGAGTTTAGCTTCAAAGAAGGGTGGACTTTTCCTAGAAAAATTTCATTCAATGGTGATGAATGTGTCATGCCATCTCCTGACACAGTCGGCTTCTTCGTTCCGCGATTCCTCCCTCCTTTTTTCGTGGTTCAAGTTAAGGAGTTAAATTTGAGGAGAGTCATTGAATTAAAGCTAAACTGTCATTCTTTCCATTCTGCTGCACTTAAACTTCTCGGTGTTCAGGAAGATAAAAATGATGCTGATGATAAGAAAGTAGCTGATGATAAGGAACAAACATATCTCCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGTACTGGAGACAAGCAACAAGATCATTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTTGCTACAGAGGATCAAATTCGTAAAAGCTATCGGGAAACTGCCTTGAGGTTTCATCCTGATAAACAGGCTGCTCTTCTTCTTGCCGAGGAAACTGAAGCTGCAAAACAAGCAAAAAAGGATGAAATAGAAAGTCATTTTAAGGCAATTCAGGAAGCATATGAAGTGTTGATTGATCCTGTGAAGAGAAGAATTTATGATTCCACAGATGAGTTTGATGATGAGATTCCCACTGATTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCTGCCTTTATGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCATCACTAGGTGATGATAACACTTCACTAAAAGATGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGCTGGAGGGAGTTTCCTCATGCTGACGAGTTTGATCTTGAGCAAGCTGAGTCTCGAGACCACAAGAGGTGGATGGAAAGGCAGAATGCAAAATTGACTGAAAAAGCTAGGAAGGAAGACTATGCAAGGATACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAGGAAGAAGAAAAGGCCGAGAAACAAAGGAAAAAGGAGGCTAAGATCTTGGCGAAGAAGTTGCAAGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAGGCAACGGAAAGTGGAGGAAGAGAGACAAGCTGCTGAAGCTGCTCTACAACAGAAGAAGGTGAAAGAGAAAGAGAAAAAGCTCTTGCGAAAGGAGCGAGCACGTCTTCGGACTCTTTCAGGACCTATTTTATCACAGCATTTGCTTGATATTTCTGATGATGATGTAGAAAGGCTTTGTATGTCGCTTGATATTGAGAAGCTGAGGAGTCTGTGTGAGAACATGGAAGGCAGACAGGTGCTATTAGAGCAAGCTAAAGTTTTGAGAGATGCACTGAGTTCTAAGAAGGAGGTGGTTGATGAGAAAACTAATCAACAAAATGCTAATGGTTCCATCAAGGCTAATGGCAGTGCTTCACAAAGCAACATTGAGAAGAAGGAGAAACCTTGGAATAAAGAAGAGATTGAACTATTGAGGAAAGGAATGCAGAAGTTTCCAAAAGGAACATCGCGAAGATGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATTATGAAGGCAACTAAAACTGTACTCCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACTTTTCTTGAGAAAAGGAAACCTGGTGCACAATCAATTGAGTCTCCACTGACAACCAGAGAAGAATTAGAAGGGGTATCAACTCCTGCATCCTCAACCACAAATAATAATAACGTGGAAGACTCTCATAGCAAAAGTACAGATAATCAGAACTCAACAAGTGCTAATGGAGTTCCTTCTAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTCTGAAAGCCTTTCCAAAGGAAACAAGCCAGAGATGGGAGCGAGTTTCAGCAGCTGTACCTGGGAAGACTGTGAATCAGTGCAAGAAAAAATTCGCAATGATGAAGGAGAGTTTCAGGAACAAGAAAACTGCAGTCTAA 3114 0.4027 MANNIFIFIFFFIIIFISPSSYGYDSLDPFGNITVTWDFLSDNGDTFDVKVSIYNFQLFRHIEEPGWKLGWAWKGDEVIWAMLGAEATEEGNCTRFRGQQKPHCCQKKPVIIDLMPGTPYNMQSANCCKGGVLTSMTQDVSKHGATFQMNYIKASTSNSSMPENFTLGVSGYSCGTPFQVSPTKFTKDGHRWQQVLETWNVTCIYSQFLASPAPKCCVSLSAFYNSTIVPCPTCSCNCQGLPGADCVNSDKTSVLKLPQTNRGEVAPPIIRCSHHMCPIRIHWHVKQSYRKHWRVKITITNLNFVKNYSHWNLVVLHPNLQSVTQVFSFNYQLLQNYGNFNDIGMFWGLPYYNDMLLTHGVNGNVQTEVLLHKDEGEFSFKEGWTFPRKISFNGDECVMPSPDTVGFFVPRFLPPFFVVQVKELNLRRVIELKLNCHSFHSAALKLLGVQEDKNDADDKKVADDKEQTYLPSDSYSSKSKKKSGTGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDNTSLKDVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKILAKKLQEEEAARIAEEERQRKVEEERQAAEAALQQKKVKEKEKKLLRKERARLRTLSGPILSQHLLDISDDDVERLCMSLDIEKLRSLCENMEGRQVLLEQAKVLRDALSSKKEVVDEKTNQQNANGSIKANGSASQSNIEKKEKPWNKEEIELLRKGMQKFPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLTTREELEGVSTPASSTTNNNNVEDSHSKSTDNQNSTSANGVPSSSEQDVWSAVQERALVQALKAFPKETSQRWERVSAAVPGKTVNQCKKKFAMMKESFRNKKTAV 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02794 1037 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 436 1034 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Cca08g02794 1037 ProSiteProfiles Myb-like domain profile. 981 1027 IPR001005 -
Cca08g02794 1037 Pfam DnaJ domain 491 570 IPR001623 -
Cca08g02794 1037 ProSiteProfiles Myb-like domain profile. 848 903 IPR001005 -
Cca08g02794 1037 Pfam COBRA-like protein 49 206 IPR006918 GO:0010215|GO:0031225
Cca08g02794 1037 SUPERFAMILY Homeodomain-like 979 1033 IPR009057 -
Cca08g02794 1037 SUPERFAMILY Homeodomain-like 849 897 IPR009057 -
Cca08g02794 1037 MobiDBLite consensus disorder prediction 926 980 - -
Cca08g02794 1037 CDD SANT 981 1027 IPR001005 -
Cca08g02794 1037 MobiDBLite consensus disorder prediction 829 850 - -
Cca08g02794 1037 ProSitePatterns Nt-dnaJ domain signature. 550 569 IPR018253 -
Cca08g02794 1037 PRINTS DnaJ domain signature 444 462 IPR001623 -
Cca08g02794 1037 PRINTS DnaJ domain signature 514 529 IPR001623 -
Cca08g02794 1037 PRINTS DnaJ domain signature 545 565 IPR001623 -
Cca08g02794 1037 MobiDBLite consensus disorder prediction 822 854 - -
Cca08g02794 1037 CDD SANT 855 897 IPR001005 -
Cca08g02794 1037 Gene3D DnaJ domain 474 583 IPR036869 -
Cca08g02794 1037 SUPERFAMILY Chaperone J-domain 489 597 IPR036869 -
Cca08g02794 1037 Coils Coil 691 765 - -
Cca08g02794 1037 ProSiteProfiles dnaJ domain profile. 491 573 IPR001623 -
Cca08g02794 1037 Gene3D - 848 906 - -
Cca08g02794 1037 Gene3D - 973 1037 - -
Cca08g02794 1037 SMART dnaj_3 490 565 IPR001623 -
Cca08g02794 1037 MobiDBLite consensus disorder prediction 916 980 - -
Cca08g02794 1037 CDD DnaJ 491 562 IPR001623 -
Cca08g02794 1037 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 436 1034 - -
Cca08g02794 1037 ProSiteProfiles SANT domain profile. 976 1031 IPR017884 -
Cca08g02794 1037 SMART sant 977 1029 IPR001005 -
Cca08g02794 1037 SMART sant 852 905 IPR001005 -
Cca08g02794 1037 MobiDBLite consensus disorder prediction 455 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02794 Cca-Chr8 62314706 62325759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02794 4 426 COBRA Gene Family AT3G29810 48.980 6.37e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca08g02794 COBRA 4.5e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02794 K09522 - gmx:100806665 972.615