Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02783 ATGTGTTGTTTGGTTGCTACTGACATGAGGCAAAGTGAAGCCAATTCAGCCAAGGGTGTCAAAGGCAATGGTAAAATCCCGCAGGGTAATTGGCTGCAACACGCCAATGCTCATGAGAATTTCTCCTGCCAAGCCAAGTTTTTGAGCTCCAATTTTATGTTCTCTGTCCCACCTAAGAAGCCTTGCCATGAAGAACCACTCCCTGGGAATGCCACGTTTGGTGTTCAACAAAGTGAAAATATTCAAGGCTCACGGAGAGTACAAGTTGAGAAGGCTTGGATTGCTCTTTCAAGTCTACAAAATTTTAGTAGAAACTATGTCCAACCTGGAAAATCGGTTGAGGTTACTCCTCAGCTTCGTGAAGATAGAAGAACGACTTCCTTCCCAGGGGGCTATGAGAATGACAAGAATAGGTGTCCAGATGTCTCCACAACCCCAATTGTTATCAATCATATTTCTCAGGGTTTGGTTGGTTCAGTCACTTCAGTGAACAATCATACTAAGTACACAGGCCAAATCAACGAGTCTTCCAAATGTATGATTGCTGATATTGGTGATGATGACTTACTTGGGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCAACTTGCACTCCCAAACCATCAATATCCAAGCTTCCTCCTACAACACCAACTGCATATAATGATAATGTTTTGCCACCAGAGCTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAAGAATTGAAGGATAATCTCATTGCTATCTCTAATGAACTGCTTGACAACAGTGAAAACCTTAATTCTACACAGATAGCAAAGCTTCGCAATGATAGGTCACAACTGAATAAGCAAATTCAACAGCTTGAACAATATATAAATTGTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATCAATTTGCATCCACGGCACCACCTACATCTTTCATGTATGAAACACCTCAACAAACTGTCCTTTGTAATGGACCTAAGAGAGATGCTTATATGGGTAATGGAACATATGGGTCATCGTTCCAGTGTCTTCCATCCTTTTCTGTAGACAATTATAGCATGTCATCAGCTCCAGTGGAGAGGGAAGCGTTTGTCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGTTGGAGCAGCCGTGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAGGGTATTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCTCTTATTTGTCCGGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTGATTCAGGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTGAGTGCCAATATGGAATGGGCTGAACAGCAGGAGATCCTACGAGAACTTAATTCTGATTGTTGTAAATACAAGTTATTATACGTGACACCCGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGACAGTTGGACAATTTACATGTTCGTGAGTTGCTTGCAAGGATTGTAATTGATGAGGCTCATTGTGTGAGCCAATGGGGCCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACGGGAATGTGGGCATAAATGTGCATTTTATCATGGTACCATGGATCCTGCTCAACGTGCTTCAGTTCAAAAGCAGTGGAGCAAAGACGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGGTTTGTAATCCACCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGgaatgtggacgagctggtagagatggtcaacgttcatcctgtgtattgtattataactatagtgattatATACGAGTTAAACATATGTTGAGTCAAGGAGCAATAGAGCAAAGTCCCATGACATCCGGATACAATCGTTCTAATATGACAAATTCAGGAAGGGTACTAGAAACCAACACCGAAAACCTTATGCGAATGGTCAGTTATTGTGAAAACGATGTTGACTGTCGGCGCCTTCTGCAACTTGTTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAGCTTCATTGAGAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAGCTAATGGGACAGAGGTTCTCCTCATCTCATATATTAGAAGTGTACCGTGGTTCCTTAAGCCAGTTGGTCAAGAAACACCGGCATGAGACTGTGAGCCTTCACGGTGCTGGAAAGCGTCTAGGTAAGGGTGAGGCTTCTCGCGTATTACATCATCTTGTCGTTGAGGATTTTCTTGTTGAGGAAGTAAAGAAAAGCGATTATTATGGATCAGTATCATCAATATTGAAGGTAAATGAGCCCAAGGTCCGTAATCTTTATGCTGGGCAGAGAATTATATTGAGATTCCCATCCTCTGTAAAGGCATCAAAACCAGGGAAATCTGATATAACTCCAGCTAAGGGTTCTCTGACATCTGGGAAGCCCAACGTTACACTAATTGACACTCCTCCCGAACCTCAAACTGAAGTGGATTTGAATCTTTCAGCTAAGTTATACACTGCTCTACGGATGTTGAGGACAAGTCTTGTTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGTAATGCTACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAAAAGAAGAACTCCTTGATATCAATGGCATTAGCAAGACTAAGGTAAGCAAGTATGGGGATCGGTTACTAGAAATCATTGAAAATACAATTAATGAATATTACAAGTTGGAGAAAGTGAGCAGTGGCAGCAAAGGCAGTGCGGATTCTTGCAAAAGGAGACGAGGGACAAATGGAGGGCTAAATGCAAATGATGAGGATGATGACGCCTTAACGAATAGCACAGGTCGTTCAAAGAGAAGGACGGTAAAGAAACAAACTAGAAAAGATGTGGTGTATGATTCTCCAGAGGAAGATTATTTCCATGGATGCTCTGATGAAGACCTAGATTTTGACGTCATAGAAATTGATGCATTAGATCAAGTAACATGTAAAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3504 0.4018 MCCLVATDMRQSEANSAKGVKGNGKIPQGNWLQHANAHENFSCQAKFLSSNFMFSVPPKKPCHEEPLPGNATFGVQQSENIQGSRRVQVEKAWIALSSLQNFSRNYVQPGKSVEVTPQLREDRRTTSFPGGYENDKNRCPDVSTTPIVINHISQGLVGSVTSVNNHTKYTGQINESSKCMIADIGDDDLLGNIDVDQIVEKYQSTCTPKPSISKLPPTTPTAYNDNVLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNSENLNSTQIAKLRNDRSQLNKQIQQLEQYINCGNLNEERQKSHQFASTAPPTSFMYETPQQTVLCNGPKRDAYMGNGTYGSSFQCLPSFSVDNYSMSSAPVEREAFVPKIIEVNYIEGSGDKRWSSRDFPWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDCCKYKLLYVTPEKVAKSDVLLRQLDNLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLRECGHKCAFYHGTMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMLSQGAIEQSPMTSGYNRSNMTNSGRVLETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLMGQRFSSSHILEVYRGSLSQLVKKHRHETVSLHGAGKRLGKGEASRVLHHLVVEDFLVEEVKKSDYYGSVSSILKVNEPKVRNLYAGQRIILRFPSSVKASKPGKSDITPAKGSLTSGKPNVTLIDTPPEPQTEVDLNLSAKLYTALRMLRTSLVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLEIIENTINEYYKLEKVSSGSKGSADSCKRRRGTNGGLNANDEDDDALTNSTGRSKRRTVKKQTRKDVVYDSPEEDYFHGCSDEDLDFDVIEIDALDQVTCKNAAGRVLPQWTAS 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02783 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 600 IPR014001 -
Cca08g02783 1167 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 409 884 IPR004589 GO:0004386|GO:0006310
Cca08g02783 1167 MobiDBLite consensus disorder prediction 1071 1118 - -
Cca08g02783 1167 CDD DEXHc_RecQ 408 607 - -
Cca08g02783 1167 Gene3D - 831 940 IPR036388 -
Cca08g02783 1167 SMART helicmild6 650 731 IPR001650 -
Cca08g02783 1167 Coils Coil 252 272 - -
Cca08g02783 1167 SMART ultradead3 413 616 IPR014001 -
Cca08g02783 1167 Gene3D HRDC domain 983 1072 IPR044876 -
Cca08g02783 1167 SUPERFAMILY HRDC-like 987 1060 IPR010997 GO:0000166|GO:0044237
Cca08g02783 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 874 IPR027417 -
Cca08g02783 1167 Pfam RQC domain 830 944 IPR018982 GO:0006260|GO:0006281|GO:0043138
Cca08g02783 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 749 IPR027417 -
Cca08g02783 1167 Coils Coil 278 298 - -
Cca08g02783 1167 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 139 1134 - -
Cca08g02783 1167 CDD SF2_C_RecQ 608 740 - -
Cca08g02783 1167 Pfam HRDC domain 988 1056 IPR002121 GO:0003676
Cca08g02783 1167 ProSiteProfiles HRDC domain profile. 984 1066 IPR002121 GO:0003676
Cca08g02783 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 625 786 IPR001650 -
Cca08g02783 1167 Pfam Helicase conserved C-terminal domain 624 730 IPR001650 -
Cca08g02783 1167 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 539 548 IPR002464 -
Cca08g02783 1167 Gene3D - 608 827 IPR027417 -
Cca08g02783 1167 Gene3D - 381 607 IPR027417 -
Cca08g02783 1167 PANTHER DNA HELICASE RECQ FAMILY MEMBER 139 1134 - -
Cca08g02783 1167 SMART hrdc7 984 1066 IPR002121 GO:0003676
Cca08g02783 1167 Pfam RecQ zinc-binding 742 824 IPR032284 -
Cca08g02783 1167 Pfam DEAD/DEAH box helicase 419 587 IPR011545 GO:0003676|GO:0005524
Cca08g02783 1167 SMART RQC_2 833 943 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02783 Cca-Chr8 62237818 62246055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02783 639 762 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 2.48e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02783 K10901 - gmx:100800006 1916.35