Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02779 ATGGAGGAGAATCTTAGTTCATATAATCCTCAACTAGTCTCTAGCTTGAAGAAGAGTTACAAGAAACAAGAGCACGATCATCATCTCAAAGAAGAAGACTACATGTCTCCATCTTTCAATCTGCGGAATGTTTCAAAGCTCATTCTTCCCCCACTTGGTGTTTCAAGCCAGAATCCAGTAAACTCGAAAGGATGGATCGTATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCGTATTCTGCATGGGTGTACCCCTTTGAAGTTGCTTTCATGCATTCTTCTTCAAATAAGAAACTCTATATTGTGGACACTGTTGTTGATCTTTTCTTCGCTATTGATATCGTTTTGACATTCTTCGTGGCTTACATTGATCGAACAACTCATCTACTAGTTCGAGACAAGAAAAAGATTGTAGTGAGATACTTGTCAACATGGTTCGTGATGGATTTGGCATCAACTATACCATATGAGGCACTTGGCTATTTGTTCACTGGCAAACACAAAGGGAGTCTCCCGTACTTTTTATTGGGCCTCCTCAGGTTTTGGAGAATCAGACGAGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTTTGGATCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAATTCATTGTGCTGGGTGTCTCTATTACATGCTAGCTGATCGCTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGAATCCAAACTTCAGAGAGACTAGCCTTCGGATCAGATACATTTCAGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGTGACCTCCATGCTGTGAACACCATGGAAATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCCGAAATCGGTTGCCTCCAAGGTTAAAAGAGCAGATCTTGGCTTACATGTGTTTAAGATTCAAGGCAGAAAGCTTGAATCAGCATCAGCTTATGGAACAACTACCAAAGTCAATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGAAACTGTAGAGAAAGTCTATCTTTTCAAAGGCGTCTCTAAAGAAATTATCTTGTCCCTGGTTGCAAAAATGAAGGCAGAATATATACCACCTAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATGTTTACATTATAGTGTCTGGAGAAGTGGAGATAATCAGTAGCGTAATGGAGAAAGAGAGAATTGTAGGGAATTTACATACTGAGGATATGTTTGGAGAGGTTGGTGCACTTTGTTGTAGACCTCAAAGCTTTACCTATAGAACCAAGACTCTCACACAACTCCTGAGACTGAAGACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAACATACAAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTCAAGGATCTGAGTATCAGAGATTTGATGGTGGAGAATGTGGAAGAAGAGGACCCTAACATGGATGTGAACTTGTTAACTGTGGCAAGCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGGAAAACTCCATTGCACATAGCAGCATCACATGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACATACATATAAAAGACATGAATGGTAACACTGCATTATGGGATGCTATAGCATCAAAACATTACTCCATATTCCGGATCCTTTTCCAGCTTGTTGCTCTTTCTGATCCAAACACAGCAGGGGATCTCCTATGTACAGCAGCAAAAAGAAATGAATTAACAGTGATGAAGGATCTCTTAAAGCTAGGAATAAACGTTGACTCTAGAGACCATCATGACACAACAGCAATCCAAATTGCCATGGCAGAAAATCGTGTTGACATGGTTCAGTTGCTTATCATGAATGGTGCAGATGTCTCTGATGTGCATTATCATGAATTTTCTTCATCCTCCTTAAATGAAATGTTGAAACAGCGTGAAATTGGACATCTAATCAATGTAAATGAGGCCATGCCCGGTGAAGTTGTCTTAAAGGGTCAACAACAAGAGCAGGATCACATTGGAGGAAGATCTACTGGAGTAAAGTTTCCAAGAGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGA 2295 0.4039 MEENLSSYNPQLVSSLKKSYKKQEHDHHLKEEDYMSPSFNLRNVSKLILPPLGVSSQNPVNSKGWIVSPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHSSSNKKLYIVDTVVDLFFAIDIVLTFFVAYIDRTTHLLVRDKKKIVVRYLSTWFVMDLASTIPYEALGYLFTGKHKGSLPYFLLGLLRFWRIRRVKQYFTRLEKDIRFSYFWIRCARLLSVTLFSIHCAGCLYYMLADRYPHQGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLMEQLPKSICKSICQHLFFETVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIISSVMEKERIVGNLHTEDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLIEAMQIKKEDNIQILKNFLQHFKQLKDLSIRDLMVENVEEEDPNMDVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASHGHEECVKVLLKHACNIHIKDMNGNTALWDAIASKHYSIFRILFQLVALSDPNTAGDLLCTAAKRNELTVMKDLLKLGINVDSRDHHDTTAIQIAMAENRVDMVQLLIMNGADVSDVHYHEFSSSSLNEMLKQREIGHLINVNEAMPGEVVLKGQQQEQDHIGGRSTGVKFPRVKNLGLMQKMQW 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02779 764 Pfam Ankyrin repeats (3 copies) 545 624 IPR002110 GO:0005515
Cca08g02779 764 Gene3D - 75 317 - -
Cca08g02779 764 SUPERFAMILY Voltage-gated potassium channels 69 317 - -
Cca08g02779 764 Pfam Ion transport protein 75 323 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca08g02779 764 SMART cnmp_10 394 511 IPR000595 -
Cca08g02779 764 SUPERFAMILY cAMP-binding domain-like 321 513 IPR018490 -
Cca08g02779 764 CDD CAP_ED 394 507 IPR000595 -
Cca08g02779 764 Gene3D Jelly Rolls 361 536 IPR014710 -
Cca08g02779 764 SMART ANK_2a 602 633 IPR002110 GO:0005515
Cca08g02779 764 SMART ANK_2a 666 695 IPR002110 GO:0005515
Cca08g02779 764 SMART ANK_2a 569 598 IPR002110 GO:0005515
Cca08g02779 764 SMART ANK_2a 536 565 IPR002110 GO:0005515
Cca08g02779 764 ProSiteProfiles Ankyrin repeat region circular profile. 569 600 - -
Cca08g02779 764 ProSiteProfiles Ankyrin repeat region circular profile. 666 694 - -
Cca08g02779 764 Pfam Cyclic nucleotide-binding domain 414 497 IPR000595 -
Cca08g02779 764 PRINTS EAG/ELK/ERG potassium channel family signature 111 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02779 764 PRINTS EAG/ELK/ERG potassium channel family signature 122 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02779 764 PRINTS EAG/ELK/ERG potassium channel family signature 264 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02779 764 PRINTS EAG/ELK/ERG potassium channel family signature 290 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02779 764 PRINTS EAG/ELK/ERG potassium channel family signature 308 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca08g02779 764 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Cca08g02779 764 PRINTS Ankyrin repeat signature 570 585 IPR002110 GO:0005515
Cca08g02779 764 PRINTS Ankyrin repeat signature 682 696 IPR002110 GO:0005515
Cca08g02779 764 SUPERFAMILY Ankyrin repeat 501 699 IPR036770 -
Cca08g02779 764 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Cca08g02779 764 Gene3D - 538 719 IPR036770 -
Cca08g02779 764 PANTHER POTASSIUM CHANNEL AKT1 38 739 IPR045319 GO:0005249|GO:0006813
Cca08g02779 764 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 38 739 - -
Cca08g02779 764 ProSiteProfiles cAMP/cGMP binding motif profile. 394 513 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02779 Cca-Chr8 62186049 62192774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02779 13 574 Ion Channels AT4G22200 72.535 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02779 K21867 - gmx:100798422 1355.5