Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02777 ATGTTATTTCTTTGTTCCAAAGGCATGAAGCTTGTTGGTGTGATGCTACCCTTGATGTTTGCACTGTTTCCATGCATGAGTTCGGCTGCGCCTGCTCCATCCGCATCCACGTGCCCTATGGACCTCAATTATGTGCTGAGAATTCCGTGGAACACTTCTGCTTGCCACAACTTCCAACAATCATTGGCATCAAAAAATGGAACAGATGCAAACAATTGTTGCATATCCCTCTTGTCCCTCTTTGGCATAGGACTTGCACAGCACCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCCGTTTCATGCATCCAAGACTTCCAATCCAAGCTCTCTTCCCTCTCTCTCCCCAAAAACCTTGCCGAGTCATGCTTTGACCCTCTTCAGTTTGTCATCTCCCCCAACATATGTGCTGGGATTCAGACCATCAATGATTGGAACAAAAAGCTTGGCCAGTCCACACCTCTCCAAACTGCTTGCAGACCAGATCTCAGTGATCTCTCCCAATGTGATGTGTGTCTGGGAGCAGGGCTACAGGTCAAGCAGGAGCTTATTTCCATTGATGGTAATTCTTCACATTCCATTGATTGTTTCTACTTTGCCATTCTCTATGCTGCTGGGATTGTGAATGAGTTTGGACCTGAAAGCAATGGTGCTGTCACTTGCATTTTTAGCATATCGGTTTATTCACAAGGGGGGTCTGGGGGAAAGGGTCACCAGGCTCTTGTGTTTGGCTTGACAGGAGCTGGGGTTGCTTTGTTGGTGATGTCTTCTTTGTTGGGGTTATATGTGTGGTATGACAAGAAGCATAGGAGGAAAAAGCTCGAGACTTTTGATCAATTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCCTAGGTTGAGACCCAATACAGGGTCTATTTGGTTCAAGATTGAGGAACTTGAGAAGGCTACTGATAAATTTTCATCCAAGAACTTCATTGGGAGAGGTGGATTTGGGTTGGTGTTCAAGGGAACCCTGTCTGATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTAGAGATTATTAGTAACCTGAAGCACAGGAATCTGGTGCCTCTTAGGGGTTGTTGTGTGGCTGAGGAGAGTGAGAAATATGATGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGGAACTTGGAGGATCATCTCTTTGTGTCAATGGAATCTCAGAAAGCAAAAGGGTCATTGACTTGGCCTCAGAGGAAAAGCATTATCTTGGATGTGGCTAAGGGGTTGGCCTATTTGCACTATGGAGTTAAACCTGCAATTTACCACAGGGATATCAAAGCCACTAATATACTACTTGATTCAGATATGAGAGCTAGAGTTGCTGATTTTGGACTTGCTAAACAAAGTAGGGAGGGTCAGTCTCATCTCactactagagtggctggaactcatggatatttagccccggaatatgcactctatggtcaactaactgagaaaagtgatgtctatagctttggtgtggttgttttggagataatgtgtggaagaaagGCTCTTGATTTGTCTTCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCTTGGTCATTGGTGAAGGCTGGGAAGATAGAGGAGGCATTGGATGGTTCCTTGGTGAAGGATGAAAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGAATTCTGTGCTCCCATGTGATGGTTGCTTTGAGGCCAACAATTGCCGATGCTTTGAAGATGTTGGAGGGTGATATTGAGGTTCCTCAAATCCCAGATCGGCCTATGCCTTTAGGCCATCCTTCTTTTTATAATGATGGAAGTACTTTTAGCATATCTCCAGCATTAAGCGGCCCCAAATTGCAAACTGGAGACATGCTCAGGTAA 1968 0.4228 MLFLCSKGMKLVGVMLPLMFALFPCMSSAAPAPSASTCPMDLNYVLRIPWNTSACHNFQQSLASKNGTDANNCCISLLSLFGIGLAQHLKETSQFQLPNLATSVSCIQDFQSKLSSLSLPKNLAESCFDPLQFVISPNICAGIQTINDWNKKLGQSTPLQTACRPDLSDLSQCDVCLGAGLQVKQELISIDGNSSHSIDCFYFAILYAAGIVNEFGPESNGAVTCIFSISVYSQGGSGGKGHQALVFGLTGAGVALLVMSSLLGLYVWYDKKHRRKKLETFDQFDFDPEEQGSRPRLRPNTGSIWFKIEELEKATDKFSSKNFIGRGGFGLVFKGTLSDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESEKYDERGSQRYLVYDYMPNGNLEDHLFVSMESQKAKGSLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDSDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKIEEALDGSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTIADALKMLEGDIEVPQIPDRPMPLGHPSFYNDGSTFSISPALSGPKLQTGDMLR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02777 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 653 - -
Cca08g02777 655 SUPERFAMILY Protein kinase-like (PK-like) 297 610 IPR011009 -
Cca08g02777 655 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Cca08g02777 655 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 33 653 - -
Cca08g02777 655 ProSiteProfiles Protein kinase domain profile. 318 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02777 655 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Cca08g02777 655 CDD STKc_IRAK 324 611 - -
Cca08g02777 655 Pfam Protein kinase domain 320 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02777 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Cca08g02777 655 Pfam SPARK 34 201 IPR043891 -
Cca08g02777 655 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Cca08g02777 655 SMART serkin_6 318 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02777 Cca-Chr8 62153170 62156104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02777 30 655 Receptor kinase-like Gene Family AT1G11050 66.348 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca08g02777 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02777 - - gmx:100806560 1181.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02777 08 62153170 62156104 Cca09g02025 09 45337922 45340581 PCT