Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02776 ATGGATTTTGGAAATGAAGCACCCAATATAAAGGTTCATGACTTCGACTTAAACATTCCATGTGTGGAGGAATTTGATGATGATGAGCATGCTGAAAAAGAGTTTTCATTCCCCATTCTCATCAATACTCTCGAGGCTTCTCAAAATAGCATTGAAAACATGGACAATGAGGATGCAAATAACGGGGACAATGAAGTTCATCAACCCTTTGCAGTGGATACAACTATTCAATCAAATTCTGCTTTCGGAGAAGTTACCTCTGAAGAAATGAGGGAGGTTGAAGCCGGGTATATTGCATCTGTCTCCTTTGCACCGGCAATAATCTCTCAACGTGgccgccgccgccgccgtcgAGGTAGAGAAGTCAAGCAGAGTATTGATCCAGATAGATTCTGCACAAATTATAATTGCAAGACAAGAAGGACTCCCTTGTGGCGCAAGGGACCTCTAGGACCAAAGACTTTGTGCAATGCTTGTGGCCTTCAATACATTAAGACGGTGTCGGGTAGAGGCAGTGATGAATTTCCAGATGAAGGTGATGCTTCCACTGCTGATGGTGATGTTTCTGCTGGTCCTGTCCCACCTGAAACCATGGAAGAGGATTCAGATCTCTAA 615 0.4146 MDFGNEAPNIKVHDFDLNIPCVEEFDDDEHAEKEFSFPILINTLEASQNSIENMDNEDANNGDNEVHQPFAVDTTIQSNSAFGEVTSEEMREVEAGYIASVSFAPAIISQRGRRRRRRGREVKQSIDPDRFCTNYNCKTRRTPLWRKGPLGPKTLCNACGLQYIKTVSGRGSDEFPDEGDASTADGDVSAGPVPPETMEEDSDL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02776 204 SMART GATA_3 126 203 IPR000679 GO:0006355|GO:0043565
Cca08g02776 204 ProSiteProfiles GATA-type zinc finger domain profile. 136 163 IPR000679 GO:0006355|GO:0043565
Cca08g02776 204 CDD ZnF_GATA 136 163 IPR000679 GO:0006355|GO:0043565
Cca08g02776 204 Pfam GATA zinc finger 132 164 IPR000679 GO:0006355|GO:0043565
Cca08g02776 204 PANTHER GATA TRANSCRIPTION FACTOR 93 170 - -
Cca08g02776 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 169 - -
Cca08g02776 204 MobiDBLite consensus disorder prediction 170 204 - -
Cca08g02776 204 Gene3D - 128 200 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02776 Cca-Chr8 62143867 62147509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02776 132 165 C2C2-Gata Transcription Factor Family AT3G20750 64.706 3.10e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca08g02776 GATA 6.3e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02776 - - gmx:102663335 207.994