Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02771 ATGACAAACCCAGTTGACCAAACTGCAATTGCAATTCACATTGTGCTTGCCTTCCTTGAGTTTCTCGCCCTCGTTCAAAGTTCAGCTCGATCATTAGTGGATCAAGAAAGAGTTAGAAACTTGAGAGAAACAATTGTAGCTCTTTTCAGTCTAAATCCAGCGATGCTAGAATCTACACCTCCAAACATTTCAGATCAACAAAATGGAAGTACATCAGCTTCACCACCTATTCAACGACCCTTTTTTACCGTAGGATCAATGATGGAGATAAATGAGACATTAGCCTTCTTGTTCCATTATTTTCAAATGGCAATTACACCACTTGGGTTCTTTGAGGGGACACGTGGAGACTACTGGATGAGAAAAAGCCGCGCCAAGCAAATTTTTAAGGACGCAATATCGGTATTGGTAGAAGCTGGGCATGTGACATTCGACGAGAAGAACCTAGCTGACGGACTGAAAATACTAGGAAACAAAGCAATGCATTGCGAAATGTATGACAATGCTATTGATTTGTATAGTATGGCGCTTGCACTGCTGAAAGATAATGCTGTCTACTTCTGCAACAGAGCTGCAGTTTTAACGAAGGTTGGAAGATTTGAGGACGCAATTCGTGATTGCTATGAAGCAATAAAACTGAAGCCGGGATATGTGATGGCATATTATCGCATTGGTTGTGCTTATTATGAGCAAGGCAAGAACCTCGAGGCTATCAGAGAGGGTTTCCTTAAAGTTTTGGAGCTAGATCCGAAAAATCAAGATGCCATGGTCAGTGTTGAGCTAGCGGAATCGAAGCTTAAATACGAAGTTGAGTCACTGACACGACAGATGGGGAAGTTGAGGTTGGGTGTGAGAGGGAGTGAGCAATCATCTGGTCGGCAGAGCACAGTGCTGGTGTTTCGGGGACCTGAAGAAGGTGGCAATGGGCCATGGGAACTGGTTGAGGATACGGGGACTGCAAATATCAATGCTGAGGACACCATAAGTGTTGCAGATTTTATTGATTCACTTGTCCGCAATGTTCCTCCACCTGAATGA 1038 0.4364 MTNPVDQTAIAIHIVLAFLEFLALVQSSARSLVDQERVRNLRETIVALFSLNPAMLESTPPNISDQQNGSTSASPPIQRPFFTVGSMMEINETLAFLFHYFQMAITPLGFFEGTRGDYWMRKSRAKQIFKDAISVLVEAGHVTFDEKNLADGLKILGNKAMHCEMYDNAIDLYSMALALLKDNAVYFCNRAAVLTKVGRFEDAIRDCYEAIKLKPGYVMAYYRIGCAYYEQGKNLEAIREGFLKVLELDPKNQDAMVSVELAESKLKYEVESLTRQMGKLRLGVRGSEQSSGRQSTVLVFRGPEEGGNGPWELVEDTGTANINAEDTISVADFIDSLVRNVPPPE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02771 345 Pfam Tetratricopeptide repeat 185 217 IPR001440 GO:0005515
Cca08g02771 345 Gene3D Tetratricopeptide repeat domain 143 294 IPR011990 GO:0005515
Cca08g02771 345 PANTHER LD24721P 14 273 - -
Cca08g02771 345 SUPERFAMILY TPR-like 147 266 IPR011990 GO:0005515
Cca08g02771 345 SMART tpr_5 218 252 IPR019734 GO:0005515
Cca08g02771 345 SMART tpr_5 184 217 IPR019734 GO:0005515
Cca08g02771 345 SMART tpr_5 150 183 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02771 Cca-Chr8 62101582 62106565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02771 149 240 U-box Gene Family AT3G07370 31.522 2.61e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02771 K16365 - atr:18436772 164.851