Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02770 ATGGGAAGAAGAAACGGTGGGAGGTCTCTGCAAGACACCCTCCGTCGTCGGCTTGAGTCATGTAAGTCCAAATACTCCACCGCCGAACAAATCGCCAACCATCTCCGCTCCACTTACCCCGACTACCACCGAACCAAGCACCAAACCCTAATTCGTTTTGTTCAGGAAGCTCTTAACTCCACTCCCTCGCTCAACCATTCTTCCGACGATGACCATGAAGCTCAGCCTCCAACCGCCTCTCGTAAGCGCCGGAAGAGAGTCGACCAAAGCGAGGAGAGGTTGCAGAGGATCGAAGCCTTGCACGTGCGAAGGAGGCTGCAGACCGATTCCTCTTCGGAGGAAGAAAACGTCTCGTCTTCCGAAGACGCGATTTACGGGGAGAAGGTGGAGCCTCAGTTTGACTTGATGAAGACAATGCTGCGAAAGTCGTATATGCCGAAGAAGGAGAAGAACGTCGAGTTGGAGGTGGGGAATAGCAATAAGGGTACTGTGACTAGCACTCTTATGAATGAGGAAGGGAAGGAAGTCAGGGGTTCGGTTTCGAATGTTGATGTGAAGGGGAATGATTGGCCTAGGTTTAGGGATTTGGGTGGGATGAAGGAGGTCTTGGAGGAGCTGAAGATGGAAGTGATTGTGCCTTTGTATCATCCCCAATTGCCTAGACAGTTGGGTGTGAGGCCGATGGCTGGCATTTTGTTGCATGGACCACCTGGTTGTGGGAAGACTAAACTTGCACATGCTATAGCTAATGAGACTGGTCTTCCTTTTTATCAGATTTCAGCTACCGAGGTGGTTTCTGGAGTCTCGGGTGCATCGGAAGAAAATATTAGAGAGCTTTTCTCTAAAGCATACAGGACTGCACCATCAATTGTCTTTATTGATGAGATCGATGCAATTGCATCAAAGAGAGAGGATTTGCAACGTGAGATGGAGAAACGAATTGTGACACAATTAATGACTTGCATGGATCAATCAAATAGGCTTCTTCAGCCAGAAAATGAGTCAGAGGGTTCTGATGGTCAACATCCTGGCTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTATTGACCCTGCCCTGAGAAGGCCTGGTCGGTTTGATCGTGAGATTATTATTGGCATTGCTGATGAATCTGCCAGGGAGGAGATCCTTTCCACGCTTACTAACAATCTTACAACTGAAGGTTTATTTGATCTACGGAAAATAGCCAAGGATACGGCAGGATATGTTGGTGCTGATTTGGTGGCTCTTGTTAACAAGGCTGGTAATCTGGCAATGAAGAGAATAATTGTTGGAAGGAGACATGATTTATCTCAAGATCACATGAACGAGCATGCTGAAGACTGGTGGAGAGTACATTGGTTGCCTGAAGAAATAAATAAGCTTGCCGTCAAAATGTCTGATTTTGAGGAAGCAGTCAACATGGTGCAACCTTCGTTAAGAAGAGATGGGTTCTCTCCTATTCCTGATGTGAAATGGGAAGACGTAGGAGGGCTTGATCTTTTAAGACAGGAGTTTGAACGTTATATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGGACTTGGGATAGATCTCGAGATGGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACGCTGATTGCCAAAGCTGTTGCCCATGAGGCAGGGGCTAATTTTATTCATGTTAAGGGACCTTCACTTCTAAATAAATATGTTGGAGAAAGCGAACTTGCAGTTCGTAGAATGTTTAGCGATGCAAGGACATGTGCACCTTGTATAATATTTTTTGATGAGGTGGATGCTTTGACAACCACACGTGGTAAAGAAGGTGGTTGGGTTATTGAACGACTGTTGAATCAGTTGCTTATTGAGTTAGATGGCGCAGAGCGAAGACGGGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTCTCCTACGGCCTGGTAGGTTTGGTAAGCTTCTTTATGTTCCACTTCCAAGCCCGGATGAGCGGGTTTTGATATTGAAAGCTCTTGCAAGGAAGAAGTGTATTGATGCCTCAGTAGACTTGAGTGCCATAGCCAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCTGATCTTTCTGCATTGATGAACGAGGCTGCAATGGCTGTAATTGATGAGAAAGAAACCTTGACCGACTTAACGCACTATACAAGGACCATCAAGAGAAATCATTTTGAGGTAGCACTTAGGAAAGTCTCTCCGTCTGTGTCAGACAGGCAAAAACAGTACTATCAGCGCTTGTCACAGAGCTTTAAAGCAGCATGA 2304 0.4575 MGRRNGGRSLQDTLRRRLESCKSKYSTAEQIANHLRSTYPDYHRTKHQTLIRFVQEALNSTPSLNHSSDDDHEAQPPTASRKRRKRVDQSEERLQRIEALHVRRRLQTDSSSEEENVSSSEDAIYGEKVEPQFDLMKTMLRKSYMPKKEKNVELEVGNSNKGTVTSTLMNEEGKEVRGSVSNVDVKGNDWPRFRDLGGMKEVLEELKMEVIVPLYHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKREDLQREMEKRIVTQLMTCMDQSNRLLQPENESEGSDGQHPGYVLVIGATNRPDAIDPALRRPGRFDREIIIGIADESAREEILSTLTNNLTTEGLFDLRKIAKDTAGYVGADLVALVNKAGNLAMKRIIVGRRHDLSQDHMNEHAEDWWRVHWLPEEINKLAVKMSDFEEAVNMVQPSLRRDGFSPIPDVKWEDVGGLDLLRQEFERYIVRRIKYPEDYEGLGIDLEMGFLLYGPPGCGKTLIAKAVAHEAGANFIHVKGPSLLNKYVGESELAVRRMFSDARTCAPCIIFFDEVDALTTTRGKEGGWVIERLLNQLLIELDGAERRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDERVLILKALARKKCIDASVDLSAIAKMEACENLSGADLSALMNEAAMAVIDEKETLTDLTHYTRTIKRNHFEVALRKVSPSVSDRQKQYYQRLSQSFKAA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02770 767 CDD AAA 532 663 - -
Cca08g02770 767 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Cca08g02770 767 PANTHER AAA-FAMILY ATPASE 30 764 - -
Cca08g02770 767 MobiDBLite consensus disorder prediction 66 111 - -
Cca08g02770 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 763 IPR027417 -
Cca08g02770 767 CDD AAA 226 375 - -
Cca08g02770 767 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 30 764 - -
Cca08g02770 767 Gene3D - 183 375 IPR027417 -
Cca08g02770 767 Gene3D - 378 485 - -
Cca08g02770 767 SMART AAA_5 227 378 IPR003593 -
Cca08g02770 767 SMART AAA_5 529 665 IPR003593 -
Cca08g02770 767 Pfam ATPase family associated with various cellular activities (AAA) 534 662 IPR003959 GO:0005524|GO:0016887
Cca08g02770 767 Pfam ATPase family associated with various cellular activities (AAA) 231 374 IPR003959 GO:0005524|GO:0016887
Cca08g02770 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 485 IPR027417 -
Cca08g02770 767 Gene3D - 664 743 - -
Cca08g02770 767 MobiDBLite consensus disorder prediction 61 123 - -
Cca08g02770 767 ProSitePatterns AAA-protein family signature. 633 651 IPR003960 GO:0005524|GO:0016887
Cca08g02770 767 Pfam AAA+ lid domain 685 722 IPR041569 -
Cca08g02770 767 Pfam AAA+ lid domain 399 446 IPR041569 -
Cca08g02770 767 Gene3D - 491 757 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02770 Cca-Chr8 62095585 62100422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02770 462 765 Calmodulin-binding Proteins AT3G56690 41.503 2.85e-64 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02770 K14571 - gmx:100809594 1229.54