Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02760 ATGGGTGCAAATTCAATATGCCAATGGAAGTGGCCTAAACGAAGTGAATGGATGAAGGGCAAAGTGGTGGGATGTGGATCTTTTGGCACTGTACATTTGGCCATAAACAAATCCACTGGTGGACTTTTTGTTGTGAAATCACCACATTCGGGTGCTGGACGCGAGGCCCTGGCTAAAGAGGTTAAAATCCTCGAGACTTTAAATTCATCGCCATATATTGTTAAATGTTTGGGGACAGAGGAGGACCAAGGCAAGATCAATATTTTTATGGAGTATATGGCAGGGGGTAATTTATCAGATGTGGCACACGAGTTTGGTGGGTCGTTGGAAGAGGAGGTGGTTCGGGTCTATACAAGAGAAATTCTTCTTGGGTTAAAGCATCTTCACCAAAATGGAGTTGTGCACTGTGACCTTAAGTGCAAGAACGTGCTTTTGGGGTCATCTGGTAACATCAAGTTGGCGGATTTTGGATGTGCAACGAGGGTAAAGGACTTGGCAGATTGTTGGCACTCTATTGGTGGGACACCTCTGTGGATGGCTCCTGAAGTATTGAGGAATGAGTCAGTGGATTTTGCTGCAGATATATGGTCCTTGGGATGTACAATTATTGAGATGGCTACTGGCACGCCTCCTTGGGCTCATCAGATTTCAAATCCATTCACTGCTGTTATCAGCATTGCCCACGGCCATGAGATACCTCAGTTTCCACCTCATTTCTCTGAGGAAGGTTTGGATTTCTTGAGCAAGTGCTTGGAGAGAGAACCCAGTAAGAGGTGTACGGCTGAGGAGTTACTTGTCCATCCATTTGTTTCCACAAGACTTTCTCACCAAAAATGTGTTTCCTCACCAGCAAGTGTCTTGGATGTTCAAAACTTCAATGATACTTATTATGATTTAGATGGATTAGAAAGTTCAGAGGGGAATGATTTCTCAACCACAAAATCATTTGCATGTCACGATGATGGCCCAAAAGGAATAACAATGTGTAAACAGGAAGACAGTGCACTGAGGTCATCAGGGAATTGGATTACTGTTAGATCAGGCTGA 1047 0.4403 MGANSICQWKWPKRSEWMKGKVVGCGSFGTVHLAINKSTGGLFVVKSPHSGAGREALAKEVKILETLNSSPYIVKCLGTEEDQGKINIFMEYMAGGNLSDVAHEFGGSLEEEVVRVYTREILLGLKHLHQNGVVHCDLKCKNVLLGSSGNIKLADFGCATRVKDLADCWHSIGGTPLWMAPEVLRNESVDFAADIWSLGCTIIEMATGTPPWAHQISNPFTAVISIAHGHEIPQFPPHFSEEGLDFLSKCLEREPSKRCTAEELLVHPFVSTRLSHQKCVSSPASVLDVQNFNDTYYDLDGLESSEGNDFSTTKSFACHDDGPKGITMCKQEDSALRSSGNWITVRSG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02760 348 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Cca08g02760 348 SMART serkin_6 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02760 348 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 11 347 - -
Cca08g02760 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Cca08g02760 348 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Cca08g02760 348 ProSiteProfiles Protein kinase domain profile. 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02760 348 CDD STKc_MAPKKK 16 270 - -
Cca08g02760 348 Pfam Protein kinase domain 19 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02760 348 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 11 347 - -
Cca08g02760 348 Gene3D Transferase(Phosphotransferase) domain 1 13 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02760 Cca-Chr8 62012448 62014355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02760 16 273 MAP Kinase Kinase Kinase AT3G06030 44.074 2.61e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca08g02760 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02760 K20716 - gmx:100798237 508.834