Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02754 ATGTCTCAGACAGGCCGTCCTCGTATTGTTGTGAACGGTGTTCGAAGAACAAGAACTTTCCACTATTTCTGGTGCCTATATTGCCAGAGAACCGTGAGATTACCCTTCACAAACAATGATATTGGTTCTTTGTGCCCCTATTGCTTCCACCAACTTCGCTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGGAACCTTCACCAGCCACTCAACTCATGCATGGCTTGGCCCTCATTCTTGATCCACCTTTAAGGAGGCAAAACAACACAACCACTACACAATGGCAAACAGAAGAAAATGATGGTAATTCAGATCCTCAATGGATTACACTCAGATTTTCAAGACCAACTCGTCCACCTAGGCCTATTTCCCCACCACAAAACTTGGTTCCAAATACCACTCACACTCTTTTTGATGAAAATAATAACACACTAGATGAGTTCATTGATGGGGTGATTCAGAACAATAATAGGCCAGGGCCACCTCCAGCAACATCCTCAGCCATTGCTGCATTGCCAATGGTGAAGCTGACACAAGCACATTTGGCGAGTGACTCCAATTGCTCTATTTGCAAAGATGAGTTTGAGCTTGATATGGAAGCTAGAGAGTTGCCATGCAAGCATTTCTATCATTCTGAATGCATCGTTCCTTGGCTGCGCATGCACAACACGTGCCCTGTGTGCCGCTATGAGCTACAAGGTGTTGATAGTGCTAATGCTAATGTTAATTACCGTTTCCAAAATGAATATGACCTGAATTTTGGGCTTGAGGATGTTACAAGCAGCTTCGTCTGGATTTGGAACCAACTAGCTTCCTTCAGGCCTATTCGTTCAGTTCTAGATTGGACACGTTCCTACTTTGATTTCCAAGAGAATCGACTTCGTGGTCGTGGAGGTATTTCTTGGTGGCGAGCATTGTTCGTTATATAG 951 0.4416 MSQTGRPRIVVNGVRRTRTFHYFWCLYCQRTVRLPFTNNDIGSLCPYCFHQLRYELDISRPRLLMNVPNNLEPSPATQLMHGLALILDPPLRRQNNTTTTQWQTEENDGNSDPQWITLRFSRPTRPPRPISPPQNLVPNTTHTLFDENNNTLDEFIDGVIQNNNRPGPPPATSSAIAALPMVKLTQAHLASDSNCSICKDEFELDMEARELPCKHFYHSECIVPWLRMHNTCPVCRYELQGVDSANANVNYRFQNEYDLNFGLEDVTSSFVWIWNQLASFRPIRSVLDWTRSYFDFQENRLRGRGGISWWRALFVI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02754 316 CDD RING-H2_RNF126_like 195 236 - -
Cca08g02754 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Cca08g02754 316 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Cca08g02754 316 SUPERFAMILY RING/U-box 176 240 - -
Cca08g02754 316 SMART ring_2 195 235 IPR001841 -
Cca08g02754 316 Pfam Ring finger domain 194 236 IPR001841 -
Cca08g02754 316 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 21 294 - -
Cca08g02754 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 21 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02754 Cca-Chr8 61975988 61977097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02754 1 297 C3H Transcription Factor Family AT1G68180 33.113 3.19e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02754 K11982 - gmx:100793656 447.203