Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02749 ATGTCATccgccgccggagctcccgaccgccgcgcctcgccgccgcaaggggctgccggcgccgccagccgcccgccgctcaagcgccacctcgccttcgccaccaaaccgccgttcgcgccgccgGATGAGTACCACAGCTTCTCCACTCCCGACTCCCGGCGCGTGGCCGATGAAGCCGTCGTTGTTAGATCTCCGTACATGAAGCGGAAGAGTGGAATGAATGACACTGAAGGAGAGTCGCAAGCACAAAAGTGGAGTAACAGCCCTGGATACACTAACGTTAGTAACATAACGAGTAGTCCCTTCAAAACTCCCGTGTCTGCAAAAGGGGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCCGACACCGATCTCAAATGCCGGTTCCCCTTCTCCTCTTACTCCTGCTAGCAGCTGTCGTTATGACAGTTCCCTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAACGTTTTGGAAGGCATTGGTCTAATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACTTCTGGTGAGGTGGATGGCGACATCTCTGTGCTTAAGGCAGAAGTTGATAAACTAACTTTGGAAGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGCGGAATTTGAGTGAAAACGAAAACAACCAGAAGTGCCTTTTTGTGACCGAAGATGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTCTAATAGCGATAAAAGCTCCACATGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAACGGTGCTGAGCACCCGATGATCCCACTTGCATCCAGTTCTGGGTCCAACGAGCAACTATTGACAGAAATGGTTCCTGCTGAGTGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGCTGAGTGCAGCGGAAAAGAACTTGAAACTCAAACTCAGCTCTCTTCTCATGCATACTCTGATCTAAATGCTTCACAGGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGATGCAGACTATTGGCTTCTATCAGATGCTGATGTTAGTATAACAGATATGTGGAGAACAGACTCTACTGTTGATTGGAATGGGGTAGACATACTTCATTCTGATTTTGGAATCGTTTCCAGGCCTCAAACTCCATCATCTGGGTTTGCTGAAGTTCCACCAACAGGAGCTAACTCTAGTCAGAAGTGA 1452 0.3988 MSSAAGAPDRRASPPQGAAGAASRPPLKRHLAFATKPPFAPPDEYHSFSTPDSRRVADEAVVVRSPYMKRKSGMNDTEGESQAQKWSNSPGYTNVSNITSSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKAEVDKLTLEEQGLDDQIREMQERLRNLSENENNQKCLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEHPMIPLASSSGSNEQLLTEMVPAECXXXXXXXXXXXXPAECSGKELETQTQLSSHAYSDLNASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVDILHSDFGIVSRPQTPSSGFAEVPPTGANSSQK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02749 483 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Cca08g02749 483 MobiDBLite consensus disorder prediction 126 143 - -
Cca08g02749 483 MobiDBLite consensus disorder prediction 1 143 - -
Cca08g02749 483 Coils Coil 225 266 - -
Cca08g02749 483 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Cca08g02749 483 Gene3D - 141 214 IPR036388 -
Cca08g02749 483 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Cca08g02749 483 CDD E2F_DD 225 329 IPR032198 GO:0046983
Cca08g02749 483 Gene3D - 219 329 - -
Cca08g02749 483 PANTHER TRANSCRIPTION FACTOR E2FB 25 468 - -
Cca08g02749 483 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Cca08g02749 483 MobiDBLite consensus disorder prediction 463 483 - -
Cca08g02749 483 PANTHER TRANSCRIPTION FACTOR E2F 25 468 IPR015633 GO:0000978|GO:0006357
Cca08g02749 483 MobiDBLite consensus disorder prediction 77 108 - -
Cca08g02749 483 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02749 Cca-Chr8 61913675 61919801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02749 25 483 E2F-DP Transcription Factor Family AT2G36010 54.397 4.15e-161 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Cca08g02749 E2F_CC-MB 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02749 K06620 - gmx:100811762 851.662