Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02748 ATGCCTAGAGAAGTGGAGAATGTGTCTATAGAGATACAAAACACTCCAAGCCAAAACCAGGAAGGTGTTATGGTGAAGGAGTTGTTGAAGTCCAATGATAATGATAAGCTGTATATCTTCCTCGAGCTTGTAACAAAAGGATCATTGGCAAGTCTCTATCAAAAGTATCGTTTAAGGGACTCTCAGGTTTCTGCATACACAAGGCAGATTTTGAGTGGTTTGAAGTATCTTCATGATCGGAATGTGGTTCACAGGGACCTCAAGTGTGCTAATATATTAGTTGATGCGAATGGATCCGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACCAAGTTGAATGATGTTAAATCAAGTAAAGGCTCCCCGTACTGGATGGCCCCTGAGGTTTTTGACTGGAGGAACCCTGGATATGGACCAGAATCTGATATATGGAGCTTAGGATGCACAGTTTTAGAGATGATGACAGGGCAACTTCCTTACTCTCATTTGGAAGCAATGCTTGCGCTATTTAGGATTGGCAGGGGTCAAACTCCAACTGTTCCAGAATCTTTATCTCTAAATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTGATCCAATCAATCGGCCAACTGCTGCTAAGTTATTGGACCATGCATTTGTAAATCCCAATATTATACAGGAAAAGTTCAGTAGTTTTGCAGATGTATACCAGAGTTAG 705 0.4113 MPREVENVSIEIQNTPSQNQEGVMVKELLKSNDNDKLYIFLELVTKGSLASLYQKYRLRDSQVSAYTRQILSGLKYLHDRNVVHRDLKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVFDWRNPGYGPESDIWSLGCTVLEMMTGQLPYSHLEAMLALFRIGRGQTPTVPESLSLNARDFILKCLQVDPINRPTAAKLLDHAFVNPNIIQEKFSSFADVYQS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02748 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
Cca08g02748 234 PRINTS Tyrosine kinase catalytic domain signature 76 94 IPR001245 GO:0004672|GO:0006468
Cca08g02748 234 PRINTS Tyrosine kinase catalytic domain signature 41 54 IPR001245 GO:0004672|GO:0006468
Cca08g02748 234 PRINTS Tyrosine kinase catalytic domain signature 185 207 IPR001245 GO:0004672|GO:0006468
Cca08g02748 234 PRINTS Tyrosine kinase catalytic domain signature 142 164 IPR001245 GO:0004672|GO:0006468
Cca08g02748 234 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02748 234 SMART serkin_6 3 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02748 234 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 17 217 - -
Cca08g02748 234 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 17 217 - -
Cca08g02748 234 Gene3D Transferase(Phosphotransferase) domain 1 11 233 - -
Cca08g02748 234 Pfam Protein kinase domain 32 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca08g02748 234 SUPERFAMILY Protein kinase-like (PK-like) 33 220 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02748 Cca-Chr8 61900454 61902795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02748 17 216 MAP Kinase Kinase Kinase AT4G08500 67.164 3.65e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca08g02748 Pkinase 2.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02748 - K13414 gmx:100806902 325.094