Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02745 ATGCCAAAGTCGAAGCGAAATAGACAAGTTACGTTGTCGAAGACGAAGAAAAAGGGAAGGGATCATAAAGAGACGATAGTGAACGGAATAAAAGAGGCAGCAGAGAAGTACGGGTGGGTGTACGTGTTCTCGTTTGAGAACATGAGGAATCAGAAATTCAAGGAGTTCAGGGAACAGCTGAAATCGAGTAGCAGGTTCTTTCTCGGTTCTAACAAAGTAATGCAGGTTGCTCTTGGTCGCTCCGCCGCTGATGAAATCAGACCCGGCCTTCACAAGGTTTCAAAGCTTTTGCGTGGAGATGCTGGAATGGTTTGTACGAATTTGCCTAAAGAAGAAGTTGAGAGGCTGTTTAAAGAATTTGAGGAATATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGGTGGATCTAAAGGAGGGTCCTCTAGAGCAGTTCACGCATGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCAGATTTTGTTGTTTGTGAGGAAGGGAAGCCCTTGTCACCTGAGGCTGCTCGCATATTGCGTTTGATGGGAATCAAGATGGCTACATTTCGACTGAACCTAATTTGCAGGTGGAGCCCCGATGAGTTTGAGCTTTACATTGATGGGCCGGATGAATCAGATGTTGAATGCTCGTAG 690 0.4551 MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKEAAEKYGWVYVFSFENMRNQKFKEFREQLKSSSRFFLGSNKVMQVALGRSAADEIRPGLHKVSKLLRGDAGMVCTNLPKEEVERLFKEFEEYDFARTGSNATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEAARILRLMGIKMATFRLNLICRWSPDEFELYIDGPDESDVECS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02745 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Cca08g02745 229 PANTHER RIBOSOME ASSEMBLY FACTOR MRT4 1 228 - -
Cca08g02745 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Cca08g02745 229 Gene3D - 30 211 IPR043141 -
Cca08g02745 229 MobiDBLite consensus disorder prediction 1 16 - -
Cca08g02745 229 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g02745 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Cca08g02745 229 SUPERFAMILY Ribosomal protein L10-like 20 143 IPR043141 -
Cca08g02745 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 228 - -
Cca08g02745 229 Gene3D - 125 198 IPR043164 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02745 35 203 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 20.710 2.84e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02745 K14815 - gmx:100305462 437.187