Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02743 ATGGCGAAGAAAGGACCATGTTTGCATTGTGGAATTAGTTCTACTCCACTTTGGCGTAATGGACCAGCTGAGAAACCGACTTTGTGTAATGCTTGTGGATCACGATACAAGTTGAAAGGACACCTAGACAATTATCTCCCCAAGAATGTCCAATTTCAGCCACTCCTCAAGAATTTAAAAAATGTTCATGCAGATGGAAGCCATGTCAATGTTGAGAACGAACTTTCAAACAATGTTCCACCAACTGATCATGATGATGAAAACAGCAACAATTCAAGCCCAGATTTCCATCACATATCAGTACAAGACTTTGGGGAAAAAGTCCCTTCAAGGAAACGATCACCGGTGGAGTACAGACAGATGTCACCAATGGAGAAGTTTCAGAAGCAACTTCTGAGATTGTATGAATGTCAAAGGAAATCAAATGAGTCACCTCCAGAAGAGAGTTTATTGGTGGATAACGTGAACAACTTCATACCCAGTAATGAGATAGGACTTGGAGCCATGCTTCTTGTGACAGATGCTGCTTCTGCAGAATGCTCCTCAATAGATAACCAAGCGCAATGA 567 0.4162 MAKKGPCLHCGISSTPLWRNGPAEKPTLCNACGSRYKLKGHLDNYLPKNVQFQPLLKNLKNVHADGSHVNVENELSNNVPPTDHDDENSNNSSPDFHHISVQDFGEKVPSRKRSPVEYRQMSPMEKFQKQLLRLYECQRKSNESPPEESLLVDNVNNFIPSNEIGLGAMLLVTDAASAECSSIDNQAQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02743 188 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cca08g02743 188 MobiDBLite consensus disorder prediction 72 98 - -
Cca08g02743 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 49 - -
Cca08g02743 188 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Cca08g02743 188 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Cca08g02743 188 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cca08g02743 188 PANTHER OSJNBB0038F03.10 PROTEIN 4 180 IPR044589 -
Cca08g02743 188 MobiDBLite consensus disorder prediction 100 114 - -
Cca08g02743 188 CDD ZnF_GATA 6 41 IPR000679 GO:0006355|GO:0043565
Cca08g02743 188 MobiDBLite consensus disorder prediction 72 118 - -
Cca08g02743 188 Gene3D - 3 91 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02743 Cca-Chr8 61861501 61864189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02743 1 47 C2C2-Gata Transcription Factor Family AT5G47140 72.340 3.89e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca08g02743 GATA 4.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02743 - - ccaj:109803880 363.999