Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02729 ATGAACTTGAGTGTCATTGTTGCGTACCGATATATTTTTGCAACAGTTTTTATTGCTCCTCTTGCTTTCATCATTGAAAGGAAGAGGAGGACAAAGATGAGTTGGACGATACTGTTTCAGTCATTTCTATGCGGCTTAATTGGCGGTGCGTTGCCTCAAAACTTAAACATGGAAGCAATTGCTTTAACTTCTGTAACGTTTACAACGGCCATATCGAACCTGGTTCCAGCCATCACCTTTATGATATCCCTCTTCTTCGGATTGGAGAGATTAAATTTAAGAACAAGAGCAGGGAAGGCGAAGATACTTGGAACGATAACCGGAATCAGTGGGGCAATGATACTCACTTTCGTTAAAGGCCCAGAAGTGAAGATGTTGTCTTTCCATGTTAACCTTTTCAACCACCGAAACGGCAACGTCGTACATCCTCACCCTTCTTCTGCCGTTATGACCGTATTTGGCGCTCTCGCCTCTGTCGCAAGCAACGTCTCTTATGCTCTCTGGCTCATCATTCAGGCAAAGATGAGTCAAAGGTACCCTGTCCTTATTCCAGTACTGCGTTGA 564 0.4397 MNLSVIVAYRYIFATVFIAPLAFIIERKRRTKMSWTILFQSFLCGLIGGALPQNLNMEAIALTSVTFTTAISNLVPAITFMISLFFGLERLNLRTRAGKAKILGTITGISGAMILTFVKGPEVKMLSFHVNLFNHRNGNVVHPHPSSAVMTVFGALASVASNVSYALWLIIQAKMSQRYPVLIPVLR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02729 187 Pfam EamA-like transporter family 5 115 IPR000620 GO:0016020|GO:0016021
Cca08g02729 187 PANTHER WAT1-RELATED PROTEIN 1 181 - -
Cca08g02729 187 SUPERFAMILY Multidrug resistance efflux transporter EmrE 9 107 - -
Cca08g02729 187 PANTHER WAT1-RELATED PROTEIN 1 181 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02729 Cca-Chr8 61725730 61727126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02729 2 178 Nodulin-like Gene Family AT1G25270 40.782 9.73e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02729 - - ccaj:109803879 353.214