Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02728 ATGGTTGAAATGAAGGGCATGTGGAATGTGTTGCATGGGTTGAAACCAGTATTGCTGATGGTGCTAGTTCAAATTGCATACGCTGCTGTCAATGTGCTTTACAAGCTCGCCATAAACGATGGAATGAGTGTAAAAGTAGCAACAGCATATCGCCTCGCTTTTGGATCTGCTTTCACTGTTCCTCTTGCTCTCATTTCTGAAAGGAAGAAAAGGCCAAAGATGACTTGGAGGGTGCTTTTCATGGCGTTTCTTTGTGGCTTATTTGGGGGAAGTTTGTTTCAAAACCTTTTCTATGAATCTTTGGCTTTAACATCAGCAACTTTTGCGTCTGCTCTCTACAACCTCATTCCAGCCATCACCTTTGTCTTGGCCATCTCCTGCGGTTTGGAAAGGTTAAATTTGAGGGCAGCGGCAGGAAGGGCCAAGGTGTTGGGAACCATAATTGGAATTGGTGGGGCAATGATGTTGACCTTTTTCAAAGGAGCAGAAATTAATATATGGCCCTTCCACATCAACCTTTTGCATCCACGTCAGCACCAAAATAGCCACGTGGCACCTGACAATAATTTGCTGGGGGCTCTTTGTGCCGTGGCAAGCTGCTTCTCTTTTGCTTTGTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCATGTCACTACTCAAGCACAGCTATGATGTCTACATCGGGAGCAATACAAGCCACTGCTTTTGGTTTCTGTTTTGAGAGGGATTTGAGCCAATGGAAGTTGGGTTGGAATATTAGGCTACTAGCTGTTGCTTATTCGGGAATCTTTGCTTCGGGAATAGTGGTTATTATCACTGCTTGGTGCATACAGATGAGAGGGCCTCTGTTTGCGTCTATTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATTGCTGGTTCTTTGATGTTGAATGAGAACTTATATGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGCTTGTACATGGTTCTATGGGGCAAAAGCAAAGAGATGAAAAATGTTACTCAGTTAGTGCCATCGGAAACAATACGAGGAGGTGAAGCCATAGAAGTTGTTGTGATGTCCACAGCTGTAGATTATGATAAGTGTGACCACCACAACAACCAAAGTGAAAGCACTACTAGAACGAATGCTACCAAAGATTTTGACGATTTGTCAAAAGAACAGGAAGAAGATGATATTCATGTATAG 1206 0.4362 MVEMKGMWNVLHGLKPVLLMVLVQIAYAAVNVLYKLAINDGMSVKVATAYRLAFGSAFTVPLALISERKKRPKMTWRVLFMAFLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCGLERLNLRAAAGRAKVLGTIIGIGGAMMLTFFKGAEINIWPFHINLLHPRQHQNSHVAPDNNLLGALCAVASCFSFALWLTIQAKMSKEYPCHYSSTAMMSTSGAIQATAFGFCFERDLSQWKLGWNIRLLAVAYSGIFASGIVVIITAWCIQMRGPLFASIFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNVTQLVPSETIRGGEAIEVVVMSTAVDYDKCDHHNNQSESTTRTNATKDFDDLSKEQEEDDIHV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02728 401 PANTHER WAT1-RELATED PROTEIN 14 363 IPR030184 GO:0016021|GO:0022857
Cca08g02728 401 PANTHER WAT1-RELATED PROTEIN 14 363 - -
Cca08g02728 401 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020|GO:0016021
Cca08g02728 401 Pfam EamA-like transporter family 15 157 IPR000620 GO:0016020|GO:0016021
Cca08g02728 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 158 - -
Cca08g02728 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 334 - -
Cca08g02728 401 MobiDBLite consensus disorder prediction 369 401 - -
Cca08g02728 401 MobiDBLite consensus disorder prediction 382 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02728 Cca-Chr8 61708271 61710888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02728 7 339 Nodulin-like Gene Family AT1G68170 44.311 2.15e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02728 - - gmx:100798755 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01511 09 38484254 38490874 Cca08g02728 08 61708271 61710888 PCT
Cca08g02728 08 61708271 61710888 Cca09g01512 09 38518095 38521062 PCT