Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02727 ATGAAGAAATTGTGCAATGTGGTGCAGGGCCTTAGGCCTGTGCTTCTAATGATAGTGGTGCAGATAGCATTTGCTGGGGTCAATATCTTCTATAAGATTGTCGTAAACGATGGCATGAGTTTGAGGATTATTGTTGCCTATCGTTTTTTATTCGCCACAGCTTTTGTCGCGCCACTTGCCCTTATTCTTGAAAGGAACAAGAGGACAAATTTGAACATGACTTGGACAGTACTGTTTCAGTCATTTCTTTGCGGTTTATTTGGGGGAACATTAGCTCAAAATTTCTACTTACAAGCCCTGTCTTTAACTTCCGCAACGTTTGCATCCGCAATGGCTAACCTTGTACCCGCCATAACCTTTATATTGGCCGTTTCCTTCGGTTTGGAAAGATTAAATTTGGGAACAGCAGCAGGGAAGGCGAAAATAGTAGGTACATTAATTGGAATCAGTGGTGCAATGGTACTTACTTTCGTTAAAGGAAAGGAAATCAATTTTGGGACCTTCCACTTAAACCTTTTGCATCACCAAAACGGTGCGCACACTGCAACAAGTGCTAAACACATCTTGGGTGCTCTATTCGCCCTAGCCAGTGGCATCAGCTATGCATTGTGGCTCATCACTCAGGCGAAGATGAGTGAAAGATACCCTTGTATTTACTCAAGTACGGCATTGATGTCACTGTGGGGAGCAATACAGTCCACTGTGTTCGCACTTTGCCTTGAGAGAGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGACTTTTTACTGCAGCTTATTCGGGTGTGGTGGTTTCTGGGGTGATGGTGGTTGTGATTTCGTGGTGCATCAAGATGAGAGGCCCATTGTTTGCCTCTGTTTTTAACCCCCTAATGCTTGTCATGGTGGCCTTGGCTGGTACTACCATGTTGAACGAGAAGCTACACCTTGGAAGCATCATTGGAGCAGTGCTGATTGTGAGTGGGTTATATGTGGTTATATGGGGCAAAAGTAAAGAGATGCAGAAGAAGAATCAATTAATGCCAGCAGAAAGTCCGAACGAATCTAATACGGTGGAAATAGTGGTTAGTTCTCAAGTAGAAGATAAAAGCAACAGAAACGAAACCCATGAAAATGGTGCACAAGTAGATAGGGATATTAACGACGATGGACACGAAGAGCATAATTCACATTGA 1176 0.4345 MKKLCNVVQGLRPVLLMIVVQIAFAGVNIFYKIVVNDGMSLRIIVAYRFLFATAFVAPLALILERNKRTNLNMTWTVLFQSFLCGLFGGTLAQNFYLQALSLTSATFASAMANLVPAITFILAVSFGLERLNLGTAAGKAKIVGTLIGISGAMVLTFVKGKEINFGTFHLNLLHHQNGAHTATSAKHILGALFALASGISYALWLITQAKMSERYPCIYSSTALMSLWGAIQSTVFALCLERDWSQWRLGWNIRLFTAAYSGVVVSGVMVVVISWCIKMRGPLFASVFNPLMLVMVALAGTTMLNEKLHLGSIIGAVLIVSGLYVVIWGKSKEMQKKNQLMPAESPNESNTVEIVVSSQVEDKSNRNETHENGAQVDRDINDDGHEEHNSH 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02727 391 MobiDBLite consensus disorder prediction 363 391 - -
Cca08g02727 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 149 - -
Cca08g02727 391 MobiDBLite consensus disorder prediction 338 362 - -
Cca08g02727 391 PANTHER WAT1-RELATED PROTEIN 12 364 IPR030184 GO:0016021|GO:0022857
Cca08g02727 391 Pfam EamA-like transporter family 12 155 IPR000620 GO:0016020|GO:0016021
Cca08g02727 391 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
Cca08g02727 391 PANTHER WAT1-RELATED PROTEIN 12 364 - -
Cca08g02727 391 MobiDBLite consensus disorder prediction 338 391 - -
Cca08g02727 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02727 Cca-Chr8 61648969 61652546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02727 11 380 Nodulin-like Gene Family AT1G25270 42.781 2.10e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02727 - - gmx:100787839 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02727 08 61648969 61652546 Cca09g01511 09 38484254 38490874 PCT