Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02721 ATGGCACACAATTATATTCAACCATGCCATGACCCTGATGAAGCCAAAAACCCTTCAAAGACGCCAAGCTTGGACGTGGAAGCACAAAGAGAGGAGAAGGGTTTTGACTATGCGAAGAGGGCACAGTGGCTTAGAGCTGCGGTTTTGGGTGCCAATGATGGGTTGCTCTCAACAGCGTCTCTCATGATGGGAGTTGGAGCTGTGAGTAAAGATGTCAAGACCATGATGCTCACTGGCGTTGCAGGCTTGGTGGCTGGAGCTTGCAGCATGGCCATAGGAGAGTTTGTTTCTGTGTACTCACAGTATGATATTGAGTTGAGGGTCCCTCTTCTTGGTGCTGCCTTTGTCAAGAGTTATAAGCTGAGGTTGGGGGTGCTGCTGGCTGTTGTCACCCTTGCCTTGCTTCTCTTTGGAGATTTGGCTGCTATTTTAGGGAAAGCACCAAGGGTGAAGTCTACTTTGAGGGTCTTGATTGGAGGCTGGATGGCCATGGCAATTACTTTTGGTTTAACAAAGCTTGTCGATCATGCCGCTCCTGGGATCGCTTTCAGCCCAAaacaacaacatcaacaccactgcccaacaccacctccaacGCTCTGCAACCTCTCTGCAATGGCTGACGAGGAACCTGTTGATCAGAAGAGATATCTTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATATCAGGCATGCATTAAAAGGATACACGGTGACGAGTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTGTTGCACCGAAGCTATTCACCAAACTGAAGTAA 825 0.4485 MAHNYIQPCHDPDEAKNPSKTPSLDVEAQREEKGFDYAKRAQWLRAAVLGANDGLLSTASLMMGVGAVSKDVKTMMLTGVAGLVAGACSMAIGEFVSVYSQYDIELRVPLLGAAFVKSYKLRLGVLLAVVTLALLLFGDLAAILGKAPRVKSTLRVLIGGWMAMAITFGLTKLVDHAAPGIAFSPKQQHQHHCPTPPPTLCNLSAMADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDESGQKHCTGQYFDYWSCIDKCVAPKLFTKLK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02721 274 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 7 106 - -
Cca08g02721 274 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 108 176 - -
Cca08g02721 274 MobiDBLite consensus disorder prediction 1 26 - -
Cca08g02721 274 Gene3D - 204 274 IPR036811 -
Cca08g02721 274 Pfam VIT family 44 105 IPR008217 GO:0005384|GO:0030026
Cca08g02721 274 Pfam VIT family 108 171 IPR008217 GO:0005384|GO:0030026
Cca08g02721 274 Pfam Ubiquinol-cytochrome C reductase hinge protein 213 274 IPR023184 -
Cca08g02721 274 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 108 176 IPR008217 GO:0005384|GO:0030026
Cca08g02721 274 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 7 106 IPR008217 GO:0005384|GO:0030026
Cca08g02721 274 MobiDBLite consensus disorder prediction 9 26 - -
Cca08g02721 274 SUPERFAMILY Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 205 274 IPR036811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02721 Cca-Chr8 61567790 61578955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02721 20 174 Nodulin-like Gene Family AT3G43630 61.376 1.48e-72 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02721 K22736 - gmx:121175311 268.855