Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02720 ATGGATGGAAGTGTTGAGGCTTTAAATGAGGAGTTGAGAATCAACGGAGTTGAGCCGTTGCCCGAGGATTTTGATGCAACTGCTGTAATCATAGATCCCGTGCCTGCTGCAGTTGCAGACATAGGCATTGTCAAGGAGGAGGCGCGGATCAAGGACAAAGCGAAAAGGGAAATAGTACTGGGAAGAAATATTCATACCATGTGTCTAGAAGTCACGGAGCCTGAAGCAGATGACGAGGTTACTGGGGATCGGGAAGCTCATATGGCAAGTGTGTTGGCCAGATACAAAAGAGCTTTGACTGAAAGGACAAAGCATCATTTAGGGTACCCCTATAATTTGGATTTTGATTATGGTGCGCTCTCACAACTTCAGCACTTTTCCATTAACAACCTGGGAGATCCATTTATCGAAAGCAACTATGGTGTCCATTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGTACAGAGGGAAATCTCCATGGCATCCTAGTTGGGAGAGAGGTCTTTCCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTATTCTATTTTTAAAGCTGCTCGAATGTACAGAATGGAATGTGTGAAGATTGATACTCTTTGGTCTGGAGAGATTGATTGTGATGATTTTGAGGCCAAGCTTCTTAGGCACAAGGATAAGCCAGCAATTATAAATGTGAACATTGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATATGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCGCAAGACAGATTCTACATCCATTGTGATGGGGCATTGTTTGGTCTCATGATGCCTTTCGTGAAAAAAGCTCCAAAAGTCACTTTTAAGAAGCCTATTGGCAGTGTCAGCGTTTCTGGCCACAAATTTGTAGGGTGTCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAATATGTTAATGCTCTCGCTAGGGATGTGGAATACCTTGCTTCTAGGGATGCCACAATCATGGGTAGTCGGAATGGCCATGCTCCCATATTCCTTTGGTATACCTTGAATCGGAAAGGATATAGAGGTTTTCAGAAAGAAGTACAGAAATGCTTGCGAAATGCACACTACTTCAAAGACCGCCTTGTTGACGCAGGGATTGGTGCAATGCTTAATGAGCTGAGCAGCACGGTTGTGTTTGAGAGGCCACATGATGAGGAATTTATACGCAAGTGGCAGTTGGCATGCAAGGGGAATATCGCACATGTGGTGGTGATGCCAAACATCACTATTGAGAAGCTTGATGATTTTCTGAACGAGCTTCTGCAGAAGCGTACTACCTGGTTTCAAGATGGAAAGGATCAACCTTATTGTATAGCATCAGATGTAGGTGAAAAGAATTGTCTTTGTGCTTTGCATAAGTAA 1452 0.4373 MDGSVEALNEELRINGVEPLPEDFDATAVIIDPVPAAVADIGIVKEEARIKDKAKREIVLGRNIHTMCLEVTEPEADDEVTGDREAHMASVLARYKRALTERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSIFKAARMYRMECVKIDTLWSGEIDCDDFEAKLLRHKDKPAIINVNIGTTVKGAVDDLDMVIKKLEEAGFSQDRFYIHCDGALFGLMMPFVKKAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEYVNALARDVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIEKLDDFLNELLQKRTTWFQDGKDQPYCIASDVGEKNCLCALHK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02720 483 PANTHER SERINE DECARBOXYLASE 1 483 - -
Cca08g02720 483 SUPERFAMILY PLP-dependent transferases 103 452 IPR015424 -
Cca08g02720 483 PANTHER - 1 483 - -
Cca08g02720 483 Gene3D Aspartate Aminotransferase, domain 1 366 454 IPR015422 GO:0003824
Cca08g02720 483 Gene3D - 121 365 IPR015421 GO:0003824
Cca08g02720 483 Pfam Pyridoxal-dependent decarboxylase conserved domain 193 402 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca08g02720 483 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 307 328 IPR021115 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02720 Cca-Chr8 61561080 61565734 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01509 09 38464366 38465901 Cca08g02720 08 61561080 61565734 PCT