Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02717 ATGATGGGTGTTGGAGTTGTTAAGGAAAATATCACATTCACAGCCATGCTTCTTGCTGGCTTTGCAGGCTTAAATGTTGGGGCTTGTAGCATGGCAATTGGAGAGTTTGTCTCTGTGTACGCTCAGTATGAGATAGAGATGAGTCAAATTAAAAGAGATAAAGATAAGAATAATGGTATAGTGGTTGAAGAAGCTCAAAGAGAGAAACTTCCAAATCCATTTGAGGCTGCTGTAGCATCAGCACTAGCATTTTCTGTTGGTGTTGCGGTACCACTGCTTGCAACTGCATTCATAAAGAACCATAACATGTTGCTGTGGCTAGTGTGGCATTGTTGGTATTTGGAGCAGTGCTTGGAAAAACTTGTGTCACCAAATCCTGTGTTAGATGGCTATGGCCATAACATTTGGCCTCACCAGGATATTCGGCTTTGCCGAATGAGATGCATTACTTTACTTTAA 459 0.4161 MMGVGVVKENITFTAMLLAGFAGLNVGACSMAIGEFVSVYAQYEIEMSQIKRDKDKNNGIVVEEAQREKLPNPFEAAVASALAFSVGVAVPLLATAFIKNHNMLLWLVWHCWYLEQCLEKLVSPNPVLDGYGHNIWPHQDIRLCRMRCITLL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02717 152 Pfam VIT family 12 56 IPR008217 GO:0005384|GO:0030026
Cca08g02717 152 PANTHER VACUOLAR IRON TRANSPORTER-LIKE PROTEIN 1 109 - -
Cca08g02717 152 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 1 109 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02717 Cca-Chr8 61548746 61549204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02717 1 108 Nodulin-like Gene Family AT3G43660 52.778 2.54e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02717 K22736 - gmx:100817158 147.517