Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02712 ATGGGTCTTATGATGGATCACCCTTCCTTTGACCTCTTACAAGGGGCTTTCAGTTTTGAATCGCCAATGAAAAGGTTGGATTTGGACTGTGGAAATTATCTAGGCCAATATACAGAAGGGGCAGTGAAGCAAGGGCTTGTGGATGAAGCATCCATCAACAATGCTGTCTCCAACAATTTCGCTACATTGATGCGTCTTGGTTTCTTTGATGGTGATCCAAGCAAGCAGCCTTATGGAAACCTTGGTCCAACGGATGTATGCACTTCAGCGAACCAGGAACTCGCTCGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTTAAAAATAGTCCAGGATCATTGCCTTTCAATGCCAAAGCCATTAAATCATTGGCAGTCATAGGGCCCAATGCTAATGCTACCAGGGTCATGATTGGAAACTATGAAGGCATTCCTTGTAAATATACATCACCTTTGCAAGCCCTAACAGCCTTGGTTCCTACGAGCTATGCTCCTGGCTGTCCGGATGTGCAATGCGCGAATGCGCAGTTAGATGATGCCACAAAGATAGCAGAGTCTGCAGATGCAACAGTGATTGTAGTGGGTGCAAGTCTTGCTATAGAGGCTGAAAGTCTTGACAGAATTAACATTCTTCTACCAGGACAACAACAACTTCTAGTGAGTGAAGTTGCTAATGTTTCCAAGGGACCTGTGATTCTTGTCATAATGTCTGGTGGAGGCATGGATGTGTCCTTTGCTAAAAATAATGATAAAATCTCAAGCATCCTATGGGTTGGTTACCCTGGCGAAGCTGGTGGAGCTGCCATAGCTGATGTGATTTTTGGCTTTTATAATCCCAGTGGAAGGCTACCAATGACATGGTATCCACAATCATATGTAGACAAGGTGCCAATGACAAACATGAACATGAGGGCAGATCCTGCTACAGGTTACCCTGGAAGAACATATAGATTCTATAAAGGTGAAACTGTTTTCTCCTTTGGAGATGGAATAAGCTTCTCAAGTGTTGAGCACAAAATAGTTAAAGCACCACAGTTGGTGTCTGTTCCCCTAGCAGAGGATCATGAGTGCCGCTCCTCAGAATGCATGTCACTTGATGTTGCTGATGAGCATTGCCAAAACTTGGCCTTTGATGTTCACCTTGTGGTCAAGAACATGGGCCAAATGAGTAGTAGCCATGTAGTGTTGTTGTTCTTTACTCCTCCTTCTGTGCACAATGCCCCTCAGAAACACTTGTTGGGTTTTGAGAAAGTGCACTTGGCAGGAAAATCAGAAGCACAGGTTAGGTTCAAAGTAGATGTTTGCAAGGATTTGAGTGTGGTTGATGAGCTTGGCAACAGGAAAGTTCCACTGGGACAACATATGCTTCATGTGGGAAACGTGAAGCATCCTTTGGCCTATGATTTGGATAACTGGAAAGGTGTTCAGCGTTACACCTTCAATGCTGTGGTGACACAACAAGATTTGGATGACACATTCCAACCACCTTTTAAGAGCTGTGTGATTGATGGAAATGTTGCTAGTGTCATGTGTTCCTACAACCAGGTTAATGGAATACCAACCTGTGCAGACCCTGACCTCCTTAAGGGGATTATCCGAGGCAAATGGAAATTAAATGGATATATAGTTTCTGACTGTGACTCGGTAGAAGTGCTTTTCAAAGATCAGCACTATACCAAGACTCCTGAAGAAGCTGCAGCCCAAACCATTCAGTCAGGGTTGGATTTGGACTGTGGAAATTATCTAGGCCAATATACAGAAGGGGCAGTGAAGCAAGGGCTTGTGGATGAAGCATCCATCAACAATGCTGTCTCCAACAATTTCGCTACATTGATGCGTCTTGGTTTCTTTGATGGTGATCCAAGCAAGCAGCCTTATGGAAACCTTGGTCCAACGGATGTATGCACTTCAGCGAACCAGGAACTCGCTCGTGAAGCTGCAAGGCAAGGGATTGTGTTGCTTAAAAATAGTCCAGGATCATTGCCTTTCAATGCCAAAGCCATTAAATCATTGGCAGTCATAGGGCCCAATGCTAATGCTACCAGGGTCATGATTGGAAACTATGAAGGCATTCCTTGTAAATATACATCACCTTTGCAAGCCCTAACAGCCTTGGTTCCTACGAGCTATGCTCCTGGCTGTCCGGATGTGCAATGCGCGAATGCGCAGTTAGATGATGCCACAAAGATAGCAGAGTCTGCAGATGCAACAGTGATTGTAGTGGGTGCAAGTCTTGCTATAGAGGCTGAAAGTCTTGACAGAATTAACATTCTTCTACCAGGACAACAACAACTTCTAGTGAGTGAAGTTGCTAATGTTTCCAAGGGACCTGTGATTCTTGTCATAATGTCTGGTGGAGGCATGGATGTGTCCTTTGCTAAAAATAATGATAAAATCTCAAGCATCCTATGGGTTGGTTACCCTGGCGAAGCTGGTGGAGCTGCCATAGCTGATGTGATTTTTGGCTTTTATAATCCCAGTGGAAGGCTACCAATGACATGGTATCCACAATCATATGTAGACAAGGTGCCAATGACAAACATGAACATGAGGGCAGATCCTGCTACAGATTGGGCCTTATTAATGTTTCTTTTCAAGAAAACAAACCCGGTCCAGCCCATTCTTGCTTGTTTCCTTGTAACCCTAAACCCCAAAGCCATTAAAACGCAGAGCATTGTCATTCGTAGCTTCATTTTCGCGGCGCACAACAAAACCGTGCTTCTTCAGATTCCGATCGCACGCGCCGTCACCATGGTGAACGTACCAAAGACGAAGAAGACGTACTGCAAGAGCAAGGAGTGCAGGAAGCACACTCTGCACAAGGTTACCCAATATAAGAAGGGTAAGGATAGCATTGCTGCACAGGGAAAACGTCGTTATGATCGCAAACAATCTGGTTATGGTGGACAAACTAAGCCTGTCTTCCACAAGAAGGCTAAGACCACCAAGAAGATTGTCCTGAGGTTGCAATGCCAGGGTTGCAAACATGTCTCCCAACACCCTATTAAGAGATGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTTTAG 3066 0.4485 MGLMMDHPSFDLLQGAFSFESPMKRLDLDCGNYLGQYTEGAVKQGLVDEASINNAVSNNFATLMRLGFFDGDPSKQPYGNLGPTDVCTSANQELAREAARQGIVLLKNSPGSLPFNAKAIKSLAVIGPNANATRVMIGNYEGIPCKYTSPLQALTALVPTSYAPGCPDVQCANAQLDDATKIAESADATVIVVGASLAIEAESLDRINILLPGQQQLLVSEVANVSKGPVILVIMSGGGMDVSFAKNNDKISSILWVGYPGEAGGAAIADVIFGFYNPSGRLPMTWYPQSYVDKVPMTNMNMRADPATGYPGRTYRFYKGETVFSFGDGISFSSVEHKIVKAPQLVSVPLAEDHECRSSECMSLDVADEHCQNLAFDVHLVVKNMGQMSSSHVVLLFFTPPSVHNAPQKHLLGFEKVHLAGKSEAQVRFKVDVCKDLSVVDELGNRKVPLGQHMLHVGNVKHPLAYDLDNWKGVQRYTFNAVVTQQDLDDTFQPPFKSCVIDGNVASVMCSYNQVNGIPTCADPDLLKGIIRGKWKLNGYIVSDCDSVEVLFKDQHYTKTPEEAAAQTIQSGLDLDCGNYLGQYTEGAVKQGLVDEASINNAVSNNFATLMRLGFFDGDPSKQPYGNLGPTDVCTSANQELAREAARQGIVLLKNSPGSLPFNAKAIKSLAVIGPNANATRVMIGNYEGIPCKYTSPLQALTALVPTSYAPGCPDVQCANAQLDDATKIAESADATVIVVGASLAIEAESLDRINILLPGQQQLLVSEVANVSKGPVILVIMSGGGMDVSFAKNNDKISSILWVGYPGEAGGAAIADVIFGFYNPSGRLPMTWYPQSYVDKVPMTNMNMRADPATDWALLMFLFKKTNPVQPILACFLVTLNPKAIKTQSIVIRSFIFAAHNKTVLLQIPIARAVTMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02712 1021 PANTHER SUGAR HYDROLASE-RELATED 465 871 IPR044993 GO:0009044|GO:0045493
Cca08g02712 1021 Pfam Ribosomal protein L44 935 1010 IPR000552 GO:0003735|GO:0005840|GO:0006412
Cca08g02712 1021 Pfam Glycosyl hydrolase family 3 C-terminal domain 650 837 IPR002772 GO:0004553|GO:0005975
Cca08g02712 1021 MobiDBLite consensus disorder prediction 950 964 - -
Cca08g02712 1021 ProSitePatterns Ribosomal protein L44e signature. 979 990 IPR000552 GO:0003735|GO:0005840|GO:0006412
Cca08g02712 1021 PANTHER BETA-XYLOSIDASE/ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 465 871 - -
Cca08g02712 1021 Gene3D - 452 624 IPR036962 GO:0004553|GO:0005975
Cca08g02712 1021 Pfam Glycosyl hydrolase family 3 C-terminal domain 103 331 IPR002772 GO:0004553|GO:0005975
Cca08g02712 1021 Gene3D - 917 1021 - -
Cca08g02712 1021 SUPERFAMILY (Trans)glycosidases 27 102 IPR017853 -
Cca08g02712 1021 Pfam Fibronectin type III-like domain 392 459 IPR026891 -
Cca08g02712 1021 PANTHER BETA-XYLOSIDASE/ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN 23 464 - -
Cca08g02712 1021 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 103 334 IPR036881 GO:0004553|GO:0005975
Cca08g02712 1021 PANTHER SUGAR HYDROLASE-RELATED 23 464 IPR044993 GO:0009044|GO:0045493
Cca08g02712 1021 Gene3D - 89 333 IPR036881 GO:0004553|GO:0005975
Cca08g02712 1021 Gene3D - 636 861 IPR036881 GO:0004553|GO:0005975
Cca08g02712 1021 Pfam Glycosyl hydrolase family 3 N terminal domain 483 604 IPR001764 GO:0004553|GO:0005975
Cca08g02712 1021 SUPERFAMILY (Trans)glycosidases 459 649 IPR017853 -
Cca08g02712 1021 SMART Fn3_like_2 392 461 IPR026891 -
Cca08g02712 1021 MobiDBLite consensus disorder prediction 950 972 - -
Cca08g02712 1021 SUPERFAMILY Zn-binding ribosomal proteins 918 1010 IPR011332 GO:0006412
Cca08g02712 1021 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 650 847 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02712 Cca-Chr8 61527082 61534290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02712 461 864 Glycoside Hydrolase AT5G09730 68.317 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02712 K15920 - gmx:100798939 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01497 09 38319707 38320618 Cca08g02712 08 61527082 61534290 PCT