Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02710 ATGGGAGATAGCAATGTCAACCTTCCACCAGGTTTTCGGTTTTATCCCACAGATGAAGAACTAGTAGTTCATTTCCTTCATAGAAAAGCATCACTTCTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCCTACGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGAAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTGACTGGGAATGGGTATTGGAAACCAACGGGAATGGAAGAACCAGTGGTTTCAGGCACAAACAACAAGAGAGTTGGTATGAAGAAATATTTTGTGTTCCATGTGGGTGAAGCCGCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTTTATCAGATTCTGCTTCCTCAACCAGATCATCCAAAAGAAAGTCACAACAAAAAATGGATTATAACAAATGGGTGATATGTCGTGTTTATGAACGCAATGGAGACGATGACAATGGAACAGAGCTGTCTTGCTTGGATGAAGTTTTCTTGTCATTGGATGATGATTTTGATGAAATAAGCTTACCAAATTAG 570 0.4123 MGDSNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVSGTNNKRVGMKKYFVFHVGEAAAGIKTNWIMQEYRLSDSASSTRSSKRKSQQKMDYNKWVICRVYERNGDDDNGTELSCLDEVFLSLDDDFDEISLPN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02710 189 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 185 - -
Cca08g02710 189 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Cca08g02710 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Cca08g02710 189 PANTHER NAC TRANSCRIPTION FACTOR 56 5 185 - -
Cca08g02710 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Cca08g02710 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02710 Cca-Chr8 61497240 61498933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02710 1 173 NAC Transcription Factor Family AT1G61110 41.146 8.88e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca08g02710 NAM 7.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02710 - - gmx:100170712 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01495 09 38303404 38305202 Cca08g02710 08 61497240 61498933 PCT