Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02698 ATGGATGTCCTAAGCCTAAGTTCAAGCCTTAATATTTCCAAGCCATTCAACTTCCATCCACTCTCTAAGAAACAGCAGAGAAATCCTGGTACGCAGTTTTGTGTTTCATGCATAGCCACGAAGCAGCGTGGAGGTGTTGATGAAAACTTCTACAAAGTACTATCTCTGAGTCCGAACAGTGCAAGCATGGATGACATAAAGAAAGCGTATAGATCAATGGCGCTTCGGTACCACCCTGACGTGTGTCGTGATAGTTCCAAGAAAGAAGAATCAACGAGGATGTTTGTTCAACTCAACGCAGCTTATGAAACGTTGTCGAATCCGAGGCTTCGAGAAGAGTATGATTATGAGTTGGGTTTGAGAAGTAAAATGAGTGTTGGTGATGAGAGTTGGAGAATTAGGTGGCAGGAGCCCGTGGCTGAGTTGAAGAGAAGGTCTCATAGAAGAATGGCACGAAAGGAGGGATCATCGTGGGGTACGTAG 483 0.4493 MDVLSLSSSLNISKPFNFHPLSKKQQRNPGTQFCVSCIATKQRGGVDENFYKVLSLSPNSASMDDIKKAYRSMALRYHPDVCRDSSKKEESTRMFVQLNAAYETLSNPRLREEYDYELGLRSKMSVGDESWRIRWQEPVAELKRRSHRRMARKEGSSWGT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02698 160 ProSiteProfiles dnaJ domain profile. 49 118 IPR001623 -
Cca08g02698 160 CDD DnaJ 49 107 IPR001623 -
Cca08g02698 160 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 3 159 - -
Cca08g02698 160 Gene3D DnaJ domain 38 138 IPR036869 -
Cca08g02698 160 SMART dnaj_3 48 110 IPR001623 -
Cca08g02698 160 Pfam DnaJ domain 49 115 IPR001623 -
Cca08g02698 160 PRINTS DnaJ domain signature 52 70 IPR001623 -
Cca08g02698 160 PRINTS DnaJ domain signature 70 85 IPR001623 -
Cca08g02698 160 PRINTS DnaJ domain signature 90 110 IPR001623 -
Cca08g02698 160 ProSitePatterns Nt-dnaJ domain signature. 95 114 IPR018253 -
Cca08g02698 160 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 159 - -
Cca08g02698 160 SUPERFAMILY Chaperone J-domain 46 114 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02698 Cca-Chr8 61380445 61381150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02698 51 115 C2H2 Transcription Factor Family AT1G74250 41.791 4.24e-07 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01483 09 38161222 38161900 Cca08g02698 08 61380445 61381150 PCT